NgypseaCBS118893 Nannizzia gypsea CBS 118893

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, DS989825:2207204-2219339

MATPredictFungiDBCIMG_00407 (core_MAT) DS989825:2207204-2207323 - identity 37.5CIMG_00407MAT1-2-4 (core_MAT) DS989825:2207213-2207392 - identity 33.333MAT1-2-4MAT1-1-1 (core_MAT) DS989825:2208025-2209228 - identity 49.7MAT1-1-1MAT1-1-4 (core_MAT) DS989825:2209884-2211155 - identity 44.3MAT1-1-4APN2 (flanking_conserved) DS989825:2211925-2214018 - identity 76.6APN2COX13 (flanking_conserved) DS989825:2214266-2214936 + identity 68.1COX13SLA2 (flanking_conserved) DS989825:2215362-2219339 - identity 88.1SLA2MGYG_05516 2201583-2203484 +: D-lactate dehydrogenaseMGYG_05516MGYG_05517 2204063-2205318 +: 40S ribosomal protein S4MGYG_05517MGYG_05518 2207001-2207943 -: unspecified productMGYG_05518MGYG_05519 2208025-2209228 -: alpha-box mating type proteinMGYG_05519MGYG_05520 2209884-2211155 -: unspecified productMGYG_05520MGYG_05521 2211925-2214018 -: DNA-(apurinic or apyrimidinic site) lyase 2MGYG_05521MGYG_05522 2214266-2214936 +: Cox13pMGYG_05522MGYG_05523 2215362-2219339 -: SLA2MGYG_05523MGYG_05524 2219888-2222591 -: uncharacterized PH domain-containing proteinMGYG_05524MGYG_05525 2223033-2223628 -: HHE domain-containing proteinMGYG_055252204 kb2206 kb2208 kb2210 kb2212 kb2214 kb2216 kb2218 kb2220 kb2222 kb2224 kbDS989825
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
CIMG_00407core_MAT2207204-2207323 -annotatedMGYG_05518unspecified productMGYG_05518 covers 100% of it on the same strand
MAT1-2-4core_MAT2207213-2207392 -annotatedMGYG_05518unspecified productMGYG_05518 covers 100% of it on the same strand
MAT1-1-1core_MAT2208025-2209228 -annotatedMGYG_05519alpha-box mating type proteinMGYG_05519 covers 100% of it on the same strand
MAT1-1-4core_MAT2209884-2211155 -annotatedMGYG_05520unspecified productMGYG_05520 covers 100% of it on the same strand
APN2flanking_conserved2211925-2214018 -annotatedMGYG_05521DNA-(apurinic or apyrimidinic site) lyase 2MGYG_05521 covers 100% of it on the same strand
COX13flanking_conserved2214266-2214936 +annotatedMGYG_05522Cox13pMGYG_05522 covers 100% of it on the same strand
SLA2flanking_conserved2215362-2219339 -annotatedMGYG_05523SLA2MGYG_05523 covers 100% of it on the same strand