NglabratusDSY562 Nakaseomyces glabratus DSY562

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, CM008082:13469-14989

MATPredictFungiDBMATALPHA1 (core_MAT) CM008082:13469-14023 - identity 44.9MATALPHA1MATA2 (core_MAT) CM008082:14357-14989 + identity 52.6MATA2MATALPHA2 (core_MAT) CM008082:14357-14989 + identity 49.3MATALPHA2B1J91_B00165r 10681-10798 -: tRNA-LeuB1J91_B00165rB1J91_B00220g 13272-13502 +: EMG1/NEP1 methyltransferase | domain-containing proteinB1J91_B00220gB1J91_B00242g 13469-14023 -: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinB1J91_B00242gB1J91_B00264g MTL3alpha2 14357-14989 +: Homeodomain | domain-containing proteinB1J91_B00264g MTL3alpha2B1J91_B00286g 15689-16771 -: Pyridoxal-phosphate dependent enzyme | domain-containing proteinB1J91_B00286gB1J91_B00308g 19417-20709 +: Vacuole-related protein 17 | domain-containing proteinB1J91_B00308g9 kb10 kb11 kb12 kb13 kb14 kb15 kb16 kb17 kb18 kb19 kbCM008082
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT13469-14023 -annotatedB1J91_B00242gMating-type protein MAT alpha 1 HMG-box | domain-containing proteinB1J91_B00242g covers 100% of it on the same strand
MATA2core_MAT14357-14989 +annotatedB1J91_B00264g MTL3alpha2Homeodomain | domain-containing proteinB1J91_B00264g covers 100% of it on the same strand
MATALPHA2core_MAT14357-14989 +annotatedB1J91_B00264g MTL3alpha2Homeodomain | domain-containing proteinB1J91_B00264g covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
B1J91_B00220g13272-13502 +EMG1/NEP1 methyltransferase | domain-containing protein