NglabratusCBS1382020 Nakaseomyces glabratus CBS138 2020

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, CP048119:13592-15112

MATPredictFungiDBMATALPHA1 (core_MAT) CP048119:13592-14146 - identity 44.9MATALPHA1MATA2 (core_MAT) CP048119:14480-15112 + identity 52.6MATA2MATALPHA2 (core_MAT) CP048119:14480-15112 + identity 49.3MATALPHA2GVI51_B00033 tL(CAA)1 11772-11890 -: tRNA-LeuGVI51_B00033 tL(CAA)1GVI51_B00055 13395-13625 +: EMG1/NEP1 methyltransferase | domain-containing proteinGVI51_B00055GVI51_B00077 HMLALPHA1 13592-14146 -: transcriptional co-activator mating type protein alphaGVI51_B00077 HMLALPHA1GVI51_B00099 HMLALPHA2 14480-15112 +: homeodomain mating type protein alpha2GVI51_B00099 HMLALPHA2GVI51_B00121 CHA1 15813-16895 -: L-serine/L-threonine ammonia-lyase CHA1GVI51_B00121 CHA1GVI51_B00143 VAC17 19543-20835 +: Vac17pGVI51_B00143 VAC179 kb10 kb11 kb12 kb13 kb14 kb15 kb16 kb17 kb18 kb19 kb20 kbCP048119
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT13592-14146 -annotatedGVI51_B00077 HMLALPHA1transcriptional co-activator mating type protein alphaGVI51_B00077 covers 100% of it on the same strand
MATA2core_MAT14480-15112 +annotatedGVI51_B00099 HMLALPHA2homeodomain mating type protein alpha2GVI51_B00099 covers 100% of it on the same strand
MATALPHA2core_MAT14480-15112 +annotatedGVI51_B00099 HMLALPHA2homeodomain mating type protein alpha2GVI51_B00099 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
GVI51_B0005513395-13625 +EMG1/NEP1 methyltransferase | domain-containing protein

Ascomycota_MATsc_1: MATalpha Ascomycota:MATsc, confidence medium, CP048119:115841-117289

MATPredictFungiDBMATALPHA1 (core_MAT) CP048119:115841-116272 - identity 44.9MATALPHA1MATA2 (core_MAT) CP048119:116729-117289 + identity 52.0MATA2MATALPHA2 (core_MAT) CP048119:116729-117289 + identity 48.4MATALPHA2GVI51_B01045 RPL37A 111975-112902 +: 60S ribosomal protein eL37GVI51_B01045 RPL37AGVI51_B01067 EMG1 115185-115874 +: 18S rRNA pseudouridine methyltransferaseGVI51_B01067 EMG1GVI51_B01089 MATalpha1 115841-116272 -: transcriptional co-activator mating type protein alphaGVI51_B01089 MATalpha1GVI51_B01111 MATalpha2 116729-117289 +: homeobox domain-containing proteinGVI51_B01111 MATalpha2GVI51_B01133 BUD5 117842-121585 +: Ras family guanine nucleotide exchange factor BUD5GVI51_B01133 BUD5GVI51_B01155 tT(AGU)1 121738-121810 -: tRNA-ThrGVI51_B01155 tT(AGU)1111 kb112 kb113 kb114 kb115 kb116 kb117 kb118 kb119 kb120 kb121 kb122 kbCP048119
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT115841-116272 -annotatedGVI51_B01089 MATalpha1transcriptional co-activator mating type protein alphaGVI51_B01089 covers 100% of it on the same strand
MATA2core_MAT116729-117289 +annotatedGVI51_B01111 MATalpha2homeobox domain-containing proteinGVI51_B01111 covers 100% of it on the same strand
MATALPHA2core_MAT116729-117289 +annotatedGVI51_B01111 MATalpha2homeobox domain-containing proteinGVI51_B01111 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
GVI51_B01067 EMG1115185-115874 +18S rRNA pseudouridine methyltransferase