NglabratusCBS138 Nakaseomyces glabratus CBS 138

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, ChrB_C_glabrata_CBS138:10582-12102

MATPredictFungiDBMATALPHA1 (core_MAT) ChrB_C_glabrata_CBS138:10582-11136 - identity 44.9MATALPHA1MATA2 (core_MAT) ChrB_C_glabrata_CBS138:11470-12102 + identity 52.6MATA2MATALPHA2 (core_MAT) ChrB_C_glabrata_CBS138:11470-12102 + identity 49.3MATALPHA2CAGL0B00165r tL(CAA)1 8762-8880 -: tRNA-Leu, predicted by tRNAscan-SE, CAA anticodonCAGL0B00165r tL(CAA)1CAGL0B00286g 9115-15952 -: Ortholog(s) have L-serine ammonia-lyase activity, L-threonine ammonia-lyase activity, role in L-serine catabolic process, threonine catabolic process and mitochondrial nucleoid localizationCAGL0B00286gCAGL0B00220g 10286-11311 +: Has domain(s) with predicted rRNA (pseudouridine) methyltransferase activity and role in rRNA base methylationCAGL0B00220gCAGL0B00242g 10582-11136 -: Alpha-domain mating-type protein alpha1pCAGL0B00242gCAGL0B00264g MTLalpha2 11470-12102 +: Homeobox-domain protein alpha2CAGL0B00264g MTLalpha2CAGL0B00308g 13791-18129 +: Ortholog(s) have protein-membrane adaptor activity, role in vacuole inheritance and Myo2p-Vac17p-Vac8p transport complex, fungal-type vacuole membrane localizationCAGL0B00308g6 kb7 kb8 kb9 kb10 kb11 kb12 kb13 kb14 kb15 kb16 kb17 kbChrB_C_glabrata_CBS138
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT10582-11136 -annotatedCAGL0B00286gOrtholog(s) have L-serine ammonia-lyase activity, L-threonine ammonia-lyase activity, role in L-serine catabolic process, threonine catabolic process and mitochondrial nucleoid localizationCAGL0B00286g covers 100% of it on the same strand
MATA2core_MAT11470-12102 +partialCAGL0B00286gOrtholog(s) have L-serine ammonia-lyase activity, L-threonine ammonia-lyase activity, role in L-serine catabolic process, threonine catabolic process and mitochondrial nucleoid localizationCAGL0B00286g overlaps 100% but on the opposite strand
MATALPHA2core_MAT11470-12102 +partialCAGL0B00286gOrtholog(s) have L-serine ammonia-lyase activity, L-threonine ammonia-lyase activity, role in L-serine catabolic process, threonine catabolic process and mitochondrial nucleoid localizationCAGL0B00286g overlaps 100% but on the opposite strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CAGL0B00220g10286-11311 +Has domain(s) with predicted rRNA (pseudouridine) methyltransferase activity and role in rRNA base methylation

Ascomycota_MATsc_1: MATalpha Ascomycota:MATsc, confidence medium, ChrB_C_glabrata_CBS138:112831-114279

MATPredictFungiDBMATALPHA1 (core_MAT) ChrB_C_glabrata_CBS138:112831-113262 - identity 44.9MATALPHA1MATA2 (core_MAT) ChrB_C_glabrata_CBS138:113719-114279 + identity 52.0MATA2MATALPHA2 (core_MAT) ChrB_C_glabrata_CBS138:113719-114279 + identity 48.4MATALPHA2CAGL0B01188g 105941-108373 -: Ortholog(s) have chromatin binding activity, role in cellular response to DNA damage stimulus, regulation of gene expression and nucleus localizationCAGL0B01188gCAGL0B01203g 108865-110074 +: Ortholog(s) have role in cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and cytosolic large ribosomal subunit, preribosome, large subunit precursor localizationCAGL0B01203gCAGL0B01232g EMG1 112146-113560 +: Ortholog(s) have rRNA (pseudouridine) methyltransferase activityCAGL0B01232g EMG1CAGL0B01243g MATalpha1 112831-113262 -: Alpha-domain mating-type protein alpha1p, expressed in all MTLalpha strains and not in MTLa strainsCAGL0B01243g MATalpha1CAGL0B01287g BUD5 113286-118665 +: Has domain(s) with predicted guanyl-nucleotide exchange factor activity, role in regulation of small GTPase mediated signal transduction, small GTPase mediated signal transduction and intracellular anatomical structure localizationCAGL0B01287g BUD5CAGL0B01265g MATalpha2 113719-114279 +: Mating-type regulatory protein alpha2, expressed in all MTLalpha strains and not in MTLa strainsCAGL0B01265g MATalpha2CAGL0B01309r tT(AGU)1 118728-118800 -: tRNA-Thr, predicted by tRNAscan-SE, AGU anticodonCAGL0B01309r tT(AGU)1108 kb109 kb110 kb111 kb112 kb113 kb114 kb115 kb116 kb117 kb118 kb119 kbChrB_C_glabrata_CBS138
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT112831-113262 -partialCAGL0B01232g EMG1Ortholog(s) have rRNA (pseudouridine) methyltransferase activityCAGL0B01232g overlaps 100% but on the opposite strand
MATA2core_MAT113719-114279 +annotatedCAGL0B01287g BUD5Has domain(s) with predicted guanyl-nucleotide exchange factor activity, role in regulation of small GTPase mediated signal transduction, small GTPase mediated signal transduction and intracellular anatomical structure localizationCAGL0B01287g covers 100% of it on the same strand
MATALPHA2core_MAT113719-114279 +annotatedCAGL0B01287g BUD5Has domain(s) with predicted guanyl-nucleotide exchange factor activity, role in regulation of small GTPase mediated signal transduction, small GTPase mediated signal transduction and intracellular anatomical structure localizationCAGL0B01287g covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CAGL0B01232g EMG1112146-113560 +Ortholog(s) have rRNA (pseudouridine) methyltransferase activity