NglabratusBG2 Nakaseomyces glabratus BG2

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MATsc_0: MATalpha Ascomycota:MATsc, confidence medium, CP048231:13287-14807

MATPredictFungiDBMATALPHA1 (core_MAT) CP048231:13287-13841 - identity 44.9MATALPHA1MATA2 (core_MAT) CP048231:14175-14807 + identity 52.6MATA2MATALPHA2 (core_MAT) CP048231:14175-14807 + identity 49.3MATALPHA2GWK60_B00033 11469-11586 -: tRNA-LeuGWK60_B00033GWK60_B00055 13090-13320 +: EMG1/NEP1 methyltransferase | domain-containing proteinGWK60_B00055GWK60_B00077 13287-13841 -: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinGWK60_B00077GWK60_B00099 14175-14807 +: MTLalpha2GWK60_B00099GWK60_B00121 15508-16590 -: Pyridoxal-phosphate dependent enzyme | domain-containing proteinGWK60_B00121GWK60_B00143 19247-20539 +: Vacuole-related protein 17 | domain-containing proteinGWK60_B001439 kb10 kb11 kb12 kb13 kb14 kb15 kb16 kb17 kb18 kb19 kbCP048231
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MATALPHA1core_MAT13287-13841 -annotatedGWK60_B00077Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinGWK60_B00077 covers 100% of it on the same strand
MATA2core_MAT14175-14807 +annotatedGWK60_B00099MTLalpha2GWK60_B00099 covers 100% of it on the same strand
MATALPHA2core_MAT14175-14807 +annotatedGWK60_B00099MTLalpha2GWK60_B00099 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
GWK60_B0005513090-13320 +EMG1/NEP1 methyltransferase | domain-containing protein