NdiscretaFGSC8579 Neurospora discreta FGSC 8579

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, NdisFGSC8579_SC002:1667552-1685056

MATPredictFungiDBCOX13 (flanking_conserved) NdisFGSC8579_SC002:1667552-1668472 - identity 72.6COX13APN2 (flanking_conserved) NdisFGSC8579_SC002:1669535-1671524 + identity 84.1APN2MAT1-1-3 (core_MAT) NdisFGSC8579_SC002:1673159-1674295 - identity 90.4MAT1-1-3MAT1-1-2 (core_MAT) NdisFGSC8579_SC002:1675049-1676440 + identity 84.9MAT1-1-2MAT1-1-1 (core_MAT) NdisFGSC8579_SC002:1676843-1677832 + identity 92.1MAT1-1-1SLA2 (flanking_conserved) NdisFGSC8579_SC002:1681715-1685056 - identity 80.2SLA2NEUDI_91748 1660014-1663336 +: Predicted E3 ubiquitin ligaseNEUDI_91748NEUDI_91750 1664439-1667597 +: Anaphase-promoting complex (APC), subunit 5NEUDI_91750NEUDI_136650 1667552-1668472 -: Cytochrome c oxidase, subunit VIa/COX13NEUDI_136650NEUDI_91756 1669286-1671733 +: Apurinic/apyrimidinic endonuclease and related enzymesNEUDI_91756NEUDI_21172 1673159-1674295 -: HMG-box transcription factorNEUDI_21172NEUDI_53545 1675049-1676440 +: Mating type protein 1-1-2 of unknown function | domain-containing proteinNEUDI_53545NEUDI_91759 1676759-1678140 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinNEUDI_91759NEUDI_108289 1680267-1680800 +: unspecified productNEUDI_108289NEUDI_91762 1681450-1685056 -: Actin-binding protein SLA2/Huntingtin-interacting protein Hip1NEUDI_91762NEUDI_21176 1685257-1685505 -: unspecified productNEUDI_21176NEUDI_73425 1686194-1688044 +: Protein involved in autophagocytosis during starvationNEUDI_73425NEUDI_123975 1688325-1689927 -: Predicted E3 ubiquitin ligaseNEUDI_1239751664 kb1668 kb1672 kb1676 kb1680 kb1684 kb1688 kbNdisFGSC8579_SC002
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1667552-1668472 -annotatedNEUDI_136650Cytochrome c oxidase, subunit VIa/COX13NEUDI_136650 covers 100% of it on the same strand
APN2flanking_conserved1669535-1671524 +annotatedNEUDI_91756Apurinic/apyrimidinic endonuclease and related enzymesNEUDI_91756 covers 100% of it on the same strand
MAT1-1-3core_MAT1673159-1674295 -annotatedNEUDI_21172HMG-box transcription factorNEUDI_21172 covers 100% of it on the same strand
MAT1-1-2core_MAT1675049-1676440 +annotatedNEUDI_53545Mating type protein 1-1-2 of unknown function | domain-containing proteinNEUDI_53545 covers 100% of it on the same strand
MAT1-1-1core_MAT1676843-1677832 +annotatedNEUDI_91759Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinNEUDI_91759 covers 100% of it on the same strand
SLA2flanking_conserved1681715-1685056 -annotatedNEUDI_91762Actin-binding protein SLA2/Huntingtin-interacting protein Hip1NEUDI_91762 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
NEUDI_917501664439-1667597 +Anaphase-promoting complex (APC), subunit 5
NEUDI_1082891680267-1680800 +unspecified product