MsympodialisATCC42132 Malassezia sympodialis ATCC 42132

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_bLocus_0: undetermined Basidiomycota:bLocus, confidence high, LT671821:721646-724665

MATPredictFungiDBbW (core_MAT) LT671821:721646-723292 - identity 96.0bWbE (core_MAT) LT671821:723796-724665 + identity 100.0bEMSYG_0443 713876-718291 +: DEAD/DEAH box helicase | Helicase associated domain (HA2), ratchet-like | Helicase conserved C-terminal domain | Oligonucleotide/oligosaccharide-binding (OB)-fold | Helicase associated domain (HA2), winged-helix | domain-containing proteinMSYG_0443MSYG_0444 718295-719345 -: Aldo/keto reductase family | domain-containing proteinMSYG_0444MSYG_0445 719429-721149 -: Amino acid permease | domain-containing proteinMSYG_0445MSYG_0446 721252-723460 -: Homeodomain | domain-containing proteinMSYG_0446MSYG_0447 723356-724665 +: Homeobox KN domain | domain-containing proteinMSYG_0447MSYG_0448 724750-725307 +: Sas10/Utp3/C1D family | domain-containing proteinMSYG_0448MSYG_0449 725415-727184 +: unspecified productMSYG_0449MSYG_0450 727227-729054 +: PTM1-like, N-terminal domain | GOST, seven transmembrane domain | domain-containing proteinMSYG_0450MSYG_0451 729354-731032 +: Major Facilitator Superfamily | domain-containing proteinMSYG_0451718 kb720 kb722 kb724 kb726 kb728 kbLT671821
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bWcore_MAT721646-723292 -annotatedMSYG_0446Homeodomain | domain-containing proteinMSYG_0446 covers 100% of it on the same strand
bEcore_MAT723796-724665 +annotatedMSYG_0447Homeobox KN domain | domain-containing proteinMSYG_0447 covers 100% of it on the same strand

Basidiomycota_aLocus_1: undetermined Basidiomycota:aLocus, confidence high, LT671821:866423-868166

MATPredictFungiDBmfa1 (core_MAT) LT671821:866423-866572 - identity 100.0mfa1pra1 (core_MAT) LT671821:866952-868166 + identity 33.2pra1MSYG_0526 860838-863645 +: Pleckstrin homology domain | RhoGEF domain | CDC24 Calponin | domain-containing proteinMSYG_0526MSYG_0527 863691-864771 -: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)MSYG_0527MSYG_0528 864898-865858 -: 3' exoribonuclease family, domain 1 | 3' exoribonuclease family, domain 2 | domain-containing proteinMSYG_0528MSYG_0529 866086-866243 +: unspecified productMSYG_0529MSYG_0530 866784-868378 +: Pheromone A receptor | domain-containing proteinMSYG_0530MSYG_0531 868027-869403 -: von Willebrand factor type A domain | Ubiquitin interaction motif | domain-containing proteinMSYG_0531MSYG_0532 869518-870480 +: poly(A)-specific ribonucleaseMSYG_0532MSYG_0533 870518-871197 -: Ubiquitin-conjugating enzyme | domain-containing proteinMSYG_0533MSYG_0534 871269-873034 +: Calcineurin-like phosphoesterase | domain-containing proteinMSYG_0534MSYG_0535 872922-875299 -: Elongation factor G domain 2 | Translation-initiation factor 2 | Elongation factor Tu GTP binding domain | domain-containing proteinMSYG_0535862 kb863 kb864 kb865 kb866 kb867 kb868 kb869 kb870 kb871 kb872 kb873 kbLT671821
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
mfa1core_MAT866423-866572 -novel—no FungiDB gene overlaps this MATPredict gene
pra1core_MAT866952-868166 +annotatedMSYG_0530Pheromone A receptor | domain-containing proteinMSYG_0530 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
MSYG_0531868027-869403 -von Willebrand factor type A domain | Ubiquitin interaction motif | domain-containing protein