MrestrictaCBS7877 Malassezia restricta CBS 7877

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_bLocus_0: undetermined Basidiomycota:bLocus, confidence high, CP033152:360779-364421

MATPredictFungiDBbW (core_MAT) CP033152:360779-362362 - identity 75.0bWbE (core_MAT) CP033152:362854-363765 + identity 45.6bEDNF11_2868 354469-358824 +: Oligonucleotide/oligosaccharide-binding (OB)-fold | DEAD/DEAH box helicase | Helicase conserved C-terminal domain | Helicase associated domain (HA2), winged-helix | Helicase associated domain (HA2), ratchet-like | domain-containing proteinDNF11_2868DNF11_2869 358863-360578 -: High-affinity methionine permeaseDNF11_2869DNF11_2870 360779-362362 -: Homeobox-leucine zipper protein HOX20DNF11_2870DNF11_2871 362854-363765 +: Mating-type locus allele B4 proteinDNF11_2871DNF11_2872 363867-364421 +: Nuclear nucleic acid-binding protein C1DDNF11_2872DNF11_2873 364495-366162 +: unspecified productDNF11_2873DNF11_2874 368096-369731 -: putative acyl-CoA dehydrogenaseDNF11_2874356 kb358 kb360 kb362 kb364 kb366 kb368 kbCP033152
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
bWcore_MAT360779-362362 -annotatedDNF11_2870Homeobox-leucine zipper protein HOX20DNF11_2870 covers 100% of it on the same strand
bEcore_MAT362854-363765 +annotatedDNF11_2871Mating-type locus allele B4 proteinDNF11_2871 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
DNF11_2872363867-364421 +Nuclear nucleic acid-binding protein C1D

Basidiomycota_aLocus_1: undetermined Basidiomycota:aLocus, confidence high, CP033151:606067-607706

MATPredictFungiDBpra1 (core_MAT) CP033151:606334-607021 - identity 24.07pra1mfa1 (core_MAT) CP033151:607557-607706 + identity 46.0mfa1DNF11_2525 600835-602979 +: Translation initiation factor IF-2, mitochondrialDNF11_2525DNF11_2526 603044-603559 +: Ubiquitin-conjugating enzyme E2 G1DNF11_2526DNF11_2527 603562-604584 -: CCR4-NOT transcription complex subunit 7DNF11_2527DNF11_2528 604623-605708 +: 26S proteasome regulatory subunit rpn10DNF11_2528DNF11_2529 605829-606468 -: Pheromone receptor 1DNF11_2529DNF11_2530 608268-609105 +: Exosome complex component RRP41DNF11_2530DNF11_2531 609342-610352 +: Glyceraldehyde-3-phosphate dehydrogenaseDNF11_2531DNF11_2532 610364-612964 -: Rho guanine nucleotide exchange factor scd1DNF11_2532602 kb603 kb604 kb605 kb606 kb607 kb608 kb609 kb610 kb611 kb612 kbCP033151
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
pra1core_MAT606334-607021 -partialDNF11_2529Pheromone receptor 1DNF11_2529 overlaps only 20% of it
mfa1core_MAT607557-607706 +novel—no FungiDB gene overlaps this MATPredict gene