Mmycetomatismm55 Madurella mycetomatis mm55

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, LCTW02000011:155210-169119

MATPredictFungiDBCOX13 (flanking_conserved) LCTW02000011:155210-156023 - identity 74.7COX13APN2 (flanking_conserved) LCTW02000011:156691-159048 + identity 84.1APN2MAT1-2-1 (core_MAT) LCTW02000011:162645-163645 + identity 55.6MAT1-2-1SLA2 (flanking_conserved) LCTW02000011:165730-169119 - identity 80.9SLA2MMYC01_200827 148777-151014 +: ER degradation-enhancing alpha-mannosidase-like protein 3MMYC01_200827MMYC01_200828 152232-154739 +: Anaphase-promoting complex subunit 5MMYC01_200828MMYC01_200829 155210-156023 -: Cytochrome c oxidase subunit 6A, mitochondrialMMYC01_200829MMYC01_200830 156691-159048 +: DNA-(apurinic or apyrimidinic site) lyase 2MMYC01_200830MMYC01_200831 160030-160497 -: unspecified productMMYC01_200831MMYC01_200832 162645-163645 +: MAT+ sexual cell fertilization-promoting factorMMYC01_200832MMYC01_200833 165730-169119 -: Endocytosis protein end4MMYC01_200833MMYC01_200834 169910-171061 +: Autophagy-related protein 3MMYC01_200834MMYC01_200835 171261-172458 -: Pre-mRNA-splicing factor cwc-24MMYC01_200835MMYC01_200836 173352-178828 -: Anucleate primary sterigmata protein AMMYC01_200836152 kb154 kb156 kb158 kb160 kb162 kb164 kb166 kb168 kb170 kb172 kb174 kbLCTW02000011
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved155210-156023 -annotatedMMYC01_200829Cytochrome c oxidase subunit 6A, mitochondrialMMYC01_200829 covers 100% of it on the same strand
APN2flanking_conserved156691-159048 +annotatedMMYC01_200830DNA-(apurinic or apyrimidinic site) lyase 2MMYC01_200830 covers 100% of it on the same strand
MAT1-2-1core_MAT162645-163645 +annotatedMMYC01_200832MAT+ sexual cell fertilization-promoting factorMMYC01_200832 covers 100% of it on the same strand
SLA2flanking_conserved165730-169119 -annotatedMMYC01_200833Endocytosis protein end4MMYC01_200833 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
MMYC01_200831160030-160497 -unspecified product