Mcircinelloides1006PhL Mucor circinelloides 1006PhL

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Mucoromycota_MAT_0: Plus Mucoromycota:MAT, confidence high, KE123975:61475-76278

MATPredictFungiDBglrA (flanking_variable) KE123975:61475-63051 + identity 86.5glrArnhA (flanking_conserved) KE123975:67540-71621 - identity 83.1rnhAsexP (core_MAT) KE123975:71964-72932 - identity 76.0sexPtptA (flanking_conserved) KE123975:73156-74602 + identity 83.5tptAalgA (flanking_variable) KE123975:74873-76278 + identity 68.2algAHMPREF1544_06110 61475-63051 +: glutathione reductase (NADPH)HMPREF1544_06110HMPREF1544_06111 63152-65710 -: hypothetical proteinHMPREF1544_06111HMPREF1544_06112 67540-71621 -: ZNFX1 domain | AAA domain | AAA domain | domain-containing proteinHMPREF1544_06112HMPREF1544_06113 71964-72932 -: HMG (high mobility group) box | domain-containing proteinHMPREF1544_06113HMPREF1544_06114 73156-74602 +: Triose-phosphate Transporter family | domain-containing proteinHMPREF1544_06114HMPREF1544_06115 74873-76278 +: Alginate lyase | domain-containing proteinHMPREF1544_06115HMPREF1544_06116 76667-82073 +: hypothetical proteinHMPREF1544_0611660 kb64 kb68 kb72 kb76 kb80 kbKE123975
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
glrAflanking_variable61475-63051 +annotatedHMPREF1544_06110glutathione reductase (NADPH)HMPREF1544_06110 covers 100% of it on the same strand
rnhAflanking_conserved67540-71621 -annotatedHMPREF1544_06112ZNFX1 domain | AAA domain | AAA domain | domain-containing proteinHMPREF1544_06112 covers 100% of it on the same strand
sexPcore_MAT71964-72932 -annotatedHMPREF1544_06113HMG (high mobility group) box | domain-containing proteinHMPREF1544_06113 covers 100% of it on the same strand
tptAflanking_conserved73156-74602 +annotatedHMPREF1544_06114Triose-phosphate Transporter family | domain-containing proteinHMPREF1544_06114 covers 100% of it on the same strand
algAflanking_variable74873-76278 +annotatedHMPREF1544_06115Alginate lyase | domain-containing proteinHMPREF1544_06115 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
HMPREF1544_0611163152-65710 -hypothetical protein