HcapsulatumH88 Histoplasma capsulatum var. duboisii H88

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, CP069104:3587172-3614321

MATPredictFungiDBSLA2 (flanking_conserved) CP069104:3587172-3591464 + identity 90.7SLA2CIMG_00407 (core_MAT) CP069104:3593701-3594306 - identity 40.0CIMG_00407MAT1-2-4 (core_MAT) CP069104:3593816-3593971 - identity 44.231MAT1-2-4MAT1-2-1 (core_MAT) CP069104:3595089-3596236 + identity 51.9MAT1-2-1MAT1-1-4 (core_MAT) CP069104:3597960-3598457 - identity 47.8MAT1-1-4COX13 (flanking_conserved) CP069104:3601221-3602138 - identity 71.8COX13APN2 (flanking_conserved) CP069104:3602503-3604759 + identity 84.1APN2MAT1-1-1 (core_MAT) CP069104:3614154-3614321 + identity 26.786MAT1-1-1I7I53_01397 3579278-3582588 +: ankyrin repeat proteinI7I53_01397I7I53_01398 3579971-3582564 -: hypothetical RNAI7I53_01398I7I53_01399 3583072-3586433 +: putative PH domain-containing proteinI7I53_01399I7I53_01400 3585625-3586504 -: hypothetical RNAI7I53_01400I7I53_01401 SLA2 3586951-3592314 +: cytoskeleton assembly control proteinI7I53_01401 SLA2I7I53_01402 3591484-3593083 -: unspecified productI7I53_01402I7I53_01403 3593426-3594588 -: unspecified productI7I53_01403I7I53_01404 3594733-3596436 +: HMG box proteinI7I53_01404I7I53_01405 3597055-3598071 -: unspecified productI7I53_01405I7I53_01406 3598209-3598938 -: unspecified productI7I53_01406I7I53_01407 3598939-3600774 -: hypothetical RNAI7I53_01407I7I53_01408 3600859-3602242 -: cytochrome c oxidase subunit VIaI7I53_01408I7I53_01409 APN2 3602357-3605913 +: DNA lyase Apn2I7I53_01409 APN2I7I53_01410 3606764-3607799 +: unspecified productI7I53_01410I7I53_01411 SRB8 3607909-3613010 +: RNA polymerase II mediator complex component Srb8I7I53_01411 SRB8I7I53_01412 CIA30 3613290-3614860 +: complex I intermediate-associated protein CIA30I7I53_01412 CIA30I7I53_01413 ADE1 3614729-3616167 -: phosphoribosyl-aminoimidazole-succinocarboxamide synthaseI7I53_01413 ADE1I7I53_01414 APC5 3616290-3619401 +: anaphase-promoting complex proteinI7I53_01414 APC5I7I53_01415 3617993-3619313 -: hypothetical RNAI7I53_014153584 kb3588 kb3592 kb3596 kb3600 kb3604 kb3608 kb3612 kb3616 kbCP069104
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved3587172-3591464 +annotatedI7I53_01401 SLA2cytoskeleton assembly control proteinI7I53_01401 covers 100% of it on the same strand
CIMG_00407core_MAT3593701-3594306 -annotatedI7I53_01403unspecified productI7I53_01403 covers 100% of it on the same strand
MAT1-2-4core_MAT3593816-3593971 -annotatedI7I53_01403unspecified productI7I53_01403 covers 100% of it on the same strand
MAT1-2-1core_MAT3595089-3596236 +annotatedI7I53_01404HMG box proteinI7I53_01404 covers 100% of it on the same strand
MAT1-1-4core_MAT3597960-3598457 -annotatedI7I53_01406unspecified productI7I53_01406 covers 50% of it on the same strand
COX13flanking_conserved3601221-3602138 -annotatedI7I53_01408cytochrome c oxidase subunit VIaI7I53_01408 covers 100% of it on the same strand
APN2flanking_conserved3602503-3604759 +annotatedI7I53_01409 APN2DNA lyase Apn2I7I53_01409 covers 100% of it on the same strand
MAT1-1-1core_MAT3614154-3614321 +annotatedI7I53_01412 CIA30complex I intermediate-associated protein CIA30I7I53_01412 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
I7I53_014023591484-3593083 -unspecified product
I7I53_014073598939-3600774 -hypothetical RNA
I7I53_014103606764-3607799 +unspecified product
I7I53_01411 SRB83607909-3613010 +RNA polymerase II mediator complex component Srb8