HcapsulatumH143 Histoplasma capsulatum H143

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, GG692431:1181534-1198727

MATPredictFungiDBSLA2 (flanking_conserved) GG692431:1181534-1185826 + identity 90.7SLA2MAT1-1-1 (core_MAT) GG692431:1189195-1190460 - identity 50.6MAT1-1-1MAT1-1-4 (core_MAT) GG692431:1191101-1192608 - identity 44.8MAT1-1-4COX13 (flanking_conserved) GG692431:1195399-1196106 - identity 70.3COX13APN2 (flanking_conserved) GG692431:1196471-1198727 + identity 84.1APN2HCDG_07533 1174020-1176787 +: ankyrin repeat proteinHCDG_07533HCDG_07534 1177598-1180824 +: uncharacterized PH domain-containing proteinHCDG_07534HCDG_07535 1181534-1186057 +: cytoskeleton assembly control proteinHCDG_07535HCDG_07536 1189195-1190460 -: alpha-box mating type proteinHCDG_07536HCDG_07537 1191101-1192608 -: conserved hypothetical proteinHCDG_07537HCDG_07538 1193650-1194614 -: PAT complex subunit Asterix | domain-containing proteinHCDG_07538HCDG_07539 1194885-1196137 -: cytochrome c oxidase subunit VIaHCDG_07539HCDG_07540 1196471-1198727 +: DNA-(apurinic or apyrimidinic site) endonuclease 2HCDG_07540HCDG_07541 1199902-1200419 -: predicted proteinHCDG_07541HCDG_07542 1201428-1206506 +: RNA polymerase II mediator complex component Srb8HCDG_075421180 kb1184 kb1188 kb1192 kb1196 kb1200 kbGG692431
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved1181534-1185826 +annotatedHCDG_07535cytoskeleton assembly control proteinHCDG_07535 covers 100% of it on the same strand
MAT1-1-1core_MAT1189195-1190460 -annotatedHCDG_07536alpha-box mating type proteinHCDG_07536 covers 100% of it on the same strand
MAT1-1-4core_MAT1191101-1192608 -annotatedHCDG_07537conserved hypothetical proteinHCDG_07537 covers 100% of it on the same strand
COX13flanking_conserved1195399-1196106 -annotatedHCDG_07539cytochrome c oxidase subunit VIaHCDG_07539 covers 100% of it on the same strand
APN2flanking_conserved1196471-1198727 +annotatedHCDG_07540DNA-(apurinic or apyrimidinic site) endonuclease 2HCDG_07540 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
HCDG_075381193650-1194614 -PAT complex subunit Asterix | domain-containing protein