HcapsulatumG186AR Histoplasma capsulatum G186AR

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, CP069122:2875070-2901580

MATPredictFungiDBMAT1-1-1 (core_MAT) CP069122:2875070-2875237 - identity 26.786MAT1-1-1APN2 (flanking_conserved) CP069122:2884702-2886956 - identity 84.1APN2COX13 (flanking_conserved) CP069122:2887322-2888238 + identity 71.8COX13MAT1-1-4 (core_MAT) CP069122:2890840-2891835 + identity 44.3MAT1-1-4MAT1-2-1 (core_MAT) CP069122:2892542-2893908 - identity 52.4MAT1-2-1CIMG_00407 (core_MAT) CP069122:2894476-2894733 + identity 37.21CIMG_00407MAT1-2-4 (core_MAT) CP069122:2894811-2894966 + identity 44.231MAT1-2-4SLA2 (flanking_conserved) CP069122:2897285-2901580 - identity 90.7SLA2I7I50_04494 APC5 2869918-2873064 -: anaphase-promoting complex proteinI7I50_04494 APC5I7I50_04495 ADE1 2873213-2874613 +: phosphoribosyl-aminoimidazole-succinocarboxamide synthaseI7I50_04495 ADE1I7I50_04496 2874533-2875001 -: unspecified productI7I50_04496I7I50_04497 CIA30 2875335-2876101 -: hypothetical RNAI7I50_04497 CIA30I7I50_04498 SRB8 2876353-2880405 -: RNA polymerase II mediator complex component Srb8I7I50_04498 SRB8I7I50_04499 2880568-2880972 -: hypothetical RNAI7I50_04499I7I50_04500 2881305-2882615 -: unspecified productI7I50_04500I7I50_04501 APN2 2883336-2887091 -: DNA lyase Apn2I7I50_04501 APN2I7I50_04502 2887220-2888543 +: cytochrome c oxidase subunit VIaI7I50_04502I7I50_04503 2888544-2890315 +: unspecified productI7I50_04503I7I50_04504 2890316-2893814 +: unspecified productI7I50_04504I7I50_04505 2891592-2894075 -: mating locus 1-2-1I7I50_04505I7I50_04506 2894182-2895322 +: unspecified productI7I50_04506I7I50_04507 SLA2 2896232-2901769 -: cytoskeleton assembly control proteinI7I50_04507 SLA2I7I50_04508 2902026-2904060 +: hypothetical RNAI7I50_04508I7I50_04509 2902298-2905708 -: putative PH domain-containing proteinI7I50_04509I7I50_04510 2906048-2909511 -: ankyrin repeat proteinI7I50_045102872 kb2876 kb2880 kb2884 kb2888 kb2892 kb2896 kb2900 kb2904 kbCP069122
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT2875070-2875237 -novel—no FungiDB gene overlaps this MATPredict gene
APN2flanking_conserved2884702-2886956 -annotatedI7I50_04501 APN2DNA lyase Apn2I7I50_04501 covers 100% of it on the same strand
COX13flanking_conserved2887322-2888238 +annotatedI7I50_04502cytochrome c oxidase subunit VIaI7I50_04502 covers 100% of it on the same strand
MAT1-1-4core_MAT2890840-2891835 +annotatedI7I50_04504unspecified productI7I50_04504 covers 100% of it on the same strand
MAT1-2-1core_MAT2892542-2893908 -annotatedI7I50_04505mating locus 1-2-1I7I50_04505 covers 100% of it on the same strand
CIMG_00407core_MAT2894476-2894733 +annotatedI7I50_04506unspecified productI7I50_04506 covers 100% of it on the same strand
MAT1-2-4core_MAT2894811-2894966 +annotatedI7I50_04506unspecified productI7I50_04506 covers 100% of it on the same strand
SLA2flanking_conserved2897285-2901580 -annotatedI7I50_04507 SLA2cytoskeleton assembly control proteinI7I50_04507 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
I7I50_04497 CIA302875335-2876101 -hypothetical RNA
I7I50_04498 SRB82876353-2880405 -RNA polymerase II mediator complex component Srb8
I7I50_044992880568-2880972 -hypothetical RNA
I7I50_045002881305-2882615 -unspecified product
I7I50_045032888544-2890315 +unspecified product