HcapsulatumG184AR Histoplasma capsulatum G184AR

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, JAEVHI010000004:2869900-2896410

MATPredictFungiDBMAT1-1-1 (core_MAT) JAEVHI010000004:2869900-2870067 - identity 26.786MAT1-1-1APN2 (flanking_conserved) JAEVHI010000004:2879532-2881786 - identity 84.1APN2COX13 (flanking_conserved) JAEVHI010000004:2882152-2883068 + identity 71.8COX13MAT1-1-4 (core_MAT) JAEVHI010000004:2885670-2886665 + identity 44.3MAT1-1-4MAT1-2-1 (core_MAT) JAEVHI010000004:2887372-2888738 - identity 52.4MAT1-2-1CIMG_00407 (core_MAT) JAEVHI010000004:2889306-2889563 + identity 37.21CIMG_00407MAT1-2-4 (core_MAT) JAEVHI010000004:2889641-2889796 + identity 44.231MAT1-2-4SLA2 (flanking_conserved) JAEVHI010000004:2892115-2896410 - identity 90.7SLA2I7I52_05403 2864748-2867894 -: anaphase-promoting complex proteinI7I52_05403I7I52_05404 2868043-2869443 +: phosphoribosyl-aminoimidazole-succinocarboxamide synthaseI7I52_05404I7I52_05405 2869363-2869831 -: unspecified productI7I52_05405I7I52_05406 2870165-2870931 -: hypothetical RNAI7I52_05406I7I52_05407 2871183-2875235 -: RNA polymerase II mediator complex component Srb8I7I52_05407I7I52_05408 2875398-2875802 -: hypothetical RNAI7I52_05408I7I52_05409 2876135-2877445 -: unspecified productI7I52_05409I7I52_05410 2878166-2881921 -: DNA lyase Apn2I7I52_05410I7I52_05411 2882050-2883373 +: cytochrome c oxidase subunit VIaI7I52_05411I7I52_05412 2883374-2885145 +: unspecified productI7I52_05412I7I52_05413 2885146-2888644 +: unspecified productI7I52_05413I7I52_05414 2886422-2888905 -: mating locus 1-2-1I7I52_05414I7I52_05415 2889012-2890152 +: unspecified productI7I52_05415I7I52_05416 2891062-2896599 -: cytoskeleton assembly control proteinI7I52_05416I7I52_05417 2896856-2898890 +: hypothetical RNAI7I52_05417I7I52_05418 2897128-2900538 -: putative PH domain-containing proteinI7I52_05418I7I52_05419 2900878-2904341 -: ankyrin repeat proteinI7I52_054192868 kb2872 kb2876 kb2880 kb2884 kb2888 kb2892 kb2896 kb2900 kbJAEVHI010000004
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT2869900-2870067 -novel—no FungiDB gene overlaps this MATPredict gene
APN2flanking_conserved2879532-2881786 -annotatedI7I52_05410DNA lyase Apn2I7I52_05410 covers 100% of it on the same strand
COX13flanking_conserved2882152-2883068 +annotatedI7I52_05411cytochrome c oxidase subunit VIaI7I52_05411 covers 100% of it on the same strand
MAT1-1-4core_MAT2885670-2886665 +annotatedI7I52_05413unspecified productI7I52_05413 covers 100% of it on the same strand
MAT1-2-1core_MAT2887372-2888738 -annotatedI7I52_05414mating locus 1-2-1I7I52_05414 covers 100% of it on the same strand
CIMG_00407core_MAT2889306-2889563 +annotatedI7I52_05415unspecified productI7I52_05415 covers 100% of it on the same strand
MAT1-2-4core_MAT2889641-2889796 +annotatedI7I52_05415unspecified productI7I52_05415 covers 100% of it on the same strand
SLA2flanking_conserved2892115-2896410 -annotatedI7I52_05416cytoskeleton assembly control proteinI7I52_05416 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
I7I52_054062870165-2870931 -hypothetical RNA
I7I52_054072871183-2875235 -RNA polymerase II mediator complex component Srb8
I7I52_054082875398-2875802 -hypothetical RNA
I7I52_054092876135-2877445 -unspecified product
I7I52_054122883374-2885145 +unspecified product