Fverticillioides7600 Fusarium verticillioides 7600

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, CM000583.1:951483-976198

MATPredictFungiDBSLA2 (flanking_conserved) CM000583.1:951483-955073 + identity 81.6SLA2MAT1-1-1 (core_MAT) CM000583.1:957491-958685 - identity 99.7MAT1-1-1MAT1-1-2 (core_MAT) CM000583.1:959142-960494 - identity 95.5MAT1-1-2MAT1-1-3 (core_MAT) CM000583.1:960903-961652 + identity 89.8MAT1-1-3APN2 (flanking_conserved) CM000583.1:962162-964392 - identity 86.4APN2COX13 (flanking_conserved) CM000583.1:964909-965670 + identity 70.7COX13FVEG_02495 946197-947859 +: pre-mRNA-splicing factor SLU7FVEG_02495FVEG_02494 947735-949005 -: 40S ribosomal protein S9FVEG_02494FVEG_02493 947901-950160 +: 50S ribosomal protein L21eFVEG_02493FVEG_02492 951147-956142 +: I/LWEQ domain | ANTH domain | domain-containing proteinFVEG_02492FVEG_02491 957491-958685 -: mating-type protein MAT-1FVEG_02491FVEG_02490 959142-960494 -: Mating type protein 1-1-2 of unknown function | domain-containing proteinFVEG_02490FVEG_02489 960903-961652 +: HMG (high mobility group) box | domain-containing proteinFVEG_02489FVEG_02488 961978-964690 -: AP endonuclease 2FVEG_02488FVEG_02487 964826-966137 +: cytochrome c oxidase subunit 6aFVEG_02487FVEG_02486 966139-969186 +: Anaphase-promoting complex subunit 5 | domain-containing proteinFVEG_02486FVEG_02485 968998-970250 -: complex I intermediate-associated protein 30, mitochondrialFVEG_02485FVEG_02484 970324-971833 +: Large ribosomal subunit protein mL45FVEG_02484FVEG_15068 971989-974921 -: Sodium:solute symporter family | domain-containing proteinFVEG_15068FVEG_02481 975846-978853 -: RNA recognition motif | domain-containing proteinFVEG_02481948 kb952 kb956 kb960 kb964 kb968 kb972 kb976 kb980 kbCM000583.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved951483-955073 +annotatedFVEG_02492I/LWEQ domain | ANTH domain | domain-containing proteinFVEG_02492 covers 100% of it on the same strand
MAT1-1-1core_MAT957491-958685 -annotatedFVEG_02491mating-type protein MAT-1FVEG_02491 covers 100% of it on the same strand
MAT1-1-2core_MAT959142-960494 -annotatedFVEG_02490Mating type protein 1-1-2 of unknown function | domain-containing proteinFVEG_02490 covers 100% of it on the same strand
MAT1-1-3core_MAT960903-961652 +annotatedFVEG_02489HMG (high mobility group) box | domain-containing proteinFVEG_02489 covers 100% of it on the same strand
APN2flanking_conserved962162-964392 -annotatedFVEG_02488AP endonuclease 2FVEG_02488 covers 100% of it on the same strand
COX13flanking_conserved964909-965670 +annotatedFVEG_02487cytochrome c oxidase subunit 6aFVEG_02487 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FVEG_02486966139-969186 +Anaphase-promoting complex subunit 5 | domain-containing protein
FVEG_02485968998-970250 -complex I intermediate-associated protein 30, mitochondrial
FVEG_02484970324-971833 +Large ribosomal subunit protein mL45
FVEG_15068971989-974921 -Sodium:solute symporter family | domain-containing protein
FVEG_02481975846-978853 -RNA recognition motif | domain-containing protein