Foxysporumrace1 Fusarium oxysporum f. sp. cubense race 1

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, KB730167:361773-378329

MATPredictFungiDBCOX13 (flanking_conserved) KB730167:361773-362534 - identity 69.8COX13APN2 (flanking_conserved) KB730167:363055-365287 + identity 86.4APN2MAT1-2-1 (core_MAT) KB730167:365838-366612 - identity 100.0MAT1-2-1SLA2 (flanking_conserved) KB730167:371599-372099 - identity 88.4SLA2MAT1-1-5 (core_MAT) KB730167:378198-378329 + identity 37.5MAT1-1-5FOC1_g10008444 355897-356923 -: Large ribosomal subunit protein mL45FOC1_g10008444FOC1_g10008445 357407-358245 +: Complex I intermediate-associated protein 30, mitochondrialFOC1_g10008445FOC1_g10008446 358444-360905 -: Anaphase-promoting complex subunit 5FOC1_g10008446FOC1_g10008447 361773-362534 -: Cytochrome c oxidase subunit 6A, mitochondrialFOC1_g10008447FOC1_g10008448 363055-365287 +: DNA-(apurinic or apyrimidinic site) lyase 2FOC1_g10008448FOC1_g10008449 365838-366612 -: Mating-type protein a-1FOC1_g10008449FOC1_g10008450 368162-368969 +: hypothetical proteinFOC1_g10008450FOC1_g10008451 369929-370187 -: hypothetical proteinFOC1_g10008451FOC1_g10008452 371599-372099 -: Endocytosis protein end4FOC1_g10008452FOC1_g10008453 372783-375166 -: Endocytosis protein end4FOC1_g10008453FOC1_g10008454 376920-377594 -: 60S ribosomal protein L21-AFOC1_g10008454FOC1_g10008455 377973-378691 +: 40S ribosomal protein S9FOC1_g10008455FOC1_g10008456 379014-380417 -: Pre-mRNA-splicing factor SLU7FOC1_g10008456FOC1_g10008457 380764-385897 +: DNA polymerase zeta catalytic subunitFOC1_g10008457360 kb364 kb368 kb372 kb376 kb380 kbKB730167
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved361773-362534 -annotatedFOC1_g10008447Cytochrome c oxidase subunit 6A, mitochondrialFOC1_g10008447 covers 100% of it on the same strand
APN2flanking_conserved363055-365287 +annotatedFOC1_g10008448DNA-(apurinic or apyrimidinic site) lyase 2FOC1_g10008448 covers 100% of it on the same strand
MAT1-2-1core_MAT365838-366612 -annotatedFOC1_g10008449Mating-type protein a-1FOC1_g10008449 covers 100% of it on the same strand
SLA2flanking_conserved371599-372099 -annotatedFOC1_g10008452Endocytosis protein end4FOC1_g10008452 covers 100% of it on the same strand
MAT1-1-5core_MAT378198-378329 +annotatedFOC1_g1000845540S ribosomal protein S9FOC1_g10008455 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FOC1_g10008450368162-368969 +hypothetical protein
FOC1_g10008451369929-370187 -hypothetical protein
FOC1_g10008453372783-375166 -Endocytosis protein end4
FOC1_g10008454376920-377594 -60S ribosomal protein L21-A