FoxysporumNRRL32931 Fusarium oxysporum NRRL 32931

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, JH717844.1:2976091-2993420

MATPredictFungiDBCOX13 (flanking_conserved) JH717844.1:2976091-2976852 - identity 69.8COX13APN2 (flanking_conserved) JH717844.1:2977376-2979608 + identity 86.4APN2MAT1-1-3 (core_MAT) JH717844.1:2980119-2980868 - identity 82.6MAT1-1-3MAT1-1-2 (core_MAT) JH717844.1:2981271-2982619 + identity 78.6MAT1-1-2MAT1-1-1 (core_MAT) JH717844.1:2983063-2984259 + identity 99.4MAT1-1-1SLA2 (flanking_conserved) JH717844.1:2986692-2990259 - identity 82.2SLA2MAT1-1-5 (core_MAT) JH717844.1:2993289-2993420 + identity 37.5MAT1-1-5FOYG_10150 2966911-2971333 +: Sodium:solute symporter family | domain-containing proteinFOYG_10150FOYG_10151 2967005-2971398 -: Large ribosomal subunit protein mL45FOYG_10151FOYG_10152 2971497-2972750 +: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinFOYG_10152FOYG_10153 2971517-2975680 -: anaphase-promoting complex subunit 5FOYG_10153FOYG_10154 2975775-2976929 -: cytochrome c oxidase subunit 6aFOYG_10154FOYG_10155 2977066-2979797 +: AP endonuclease 2FOYG_10155FOYG_10156 2980119-2980868 -: HMG (high mobility group) box | domain-containing proteinFOYG_10156FOYG_10157 2981271-2982619 +: Mating type protein 1-1-2 of unknown function | domain-containing proteinFOYG_10157FOYG_10158 2983063-2984259 +: mating-type protein MAT-1FOYG_10158FOYG_10159 2984649-2985393 -: hypothetical proteinFOYG_10159FOYG_10160 2986122-2990590 -: ANTH domain | I/LWEQ domain | domain-containing proteinFOYG_10160FOYG_10161 2991747-2993906 -: 50S ribosomal protein L21eFOYG_10161FOYG_10162 2992808-2994074 +: 40S ribosomal protein S9FOYG_10162FOYG_10163 2994005-2995611 -: pre-mRNA-splicing factor SLU7FOYG_10163FOYG_10164 2995735-3001213 +: DNA polymerase zeta subunitFOYG_101642972 kb2976 kb2980 kb2984 kb2988 kb2992 kb2996 kbJH717844.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved2976091-2976852 -annotatedFOYG_10154cytochrome c oxidase subunit 6aFOYG_10154 covers 100% of it on the same strand
APN2flanking_conserved2977376-2979608 +annotatedFOYG_10155AP endonuclease 2FOYG_10155 covers 100% of it on the same strand
MAT1-1-3core_MAT2980119-2980868 -annotatedFOYG_10156HMG (high mobility group) box | domain-containing proteinFOYG_10156 covers 100% of it on the same strand
MAT1-1-2core_MAT2981271-2982619 +annotatedFOYG_10157Mating type protein 1-1-2 of unknown function | domain-containing proteinFOYG_10157 covers 100% of it on the same strand
MAT1-1-1core_MAT2983063-2984259 +annotatedFOYG_10158mating-type protein MAT-1FOYG_10158 covers 100% of it on the same strand
SLA2flanking_conserved2986692-2990259 -annotatedFOYG_10160ANTH domain | I/LWEQ domain | domain-containing proteinFOYG_10160 covers 100% of it on the same strand
MAT1-1-5core_MAT2993289-2993420 +partialFOYG_1016150S ribosomal protein L21eFOYG_10161 overlaps 100% but on the opposite strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FOYG_101592984649-2985393 -hypothetical protein
FOYG_101612991747-2993906 -50S ribosomal protein L21e