FoxysporumFo5176 Fusarium oxysporum f. sp. conglutinans Fo5176

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, CM024366:3155400-3172692

MATPredictFungiDBCOX13 (flanking_conserved) CM024366:3155400-3156161 - identity 69.8COX13APN2 (flanking_conserved) CM024366:3156682-3158884 + identity 86.4APN2MAT1-1-3 (core_MAT) CM024366:3159386-3160144 - identity 81.9MAT1-1-3MAT1-1-2 (core_MAT) CM024366:3160547-3161895 + identity 79.1MAT1-1-2MAT1-1-1 (core_MAT) CM024366:3162339-3163535 + identity 99.2MAT1-1-1SLA2 (flanking_conserved) CM024366:3165966-3169533 - identity 81.6SLA2MAT1-1-5 (core_MAT) CM024366:3172561-3172692 + identity 37.5MAT1-1-5HZS61_015695 3149524-3150535 -: Large ribosomal subunit protein mL45HZS61_015695HZS61_015696 3151034-3151872 +: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinHZS61_015696HZS61_015697 3152071-3154532 -: Anaphase-promoting complex subunit 5 | domain-containing proteinHZS61_015697HZS61_015698 3155400-3156161 -: Cytochrome c oxidase subunit VIa | domain-containing proteinHZS61_015698HZS61_015699 3156682-3158884 +: DNA-(apurinic or apyrimidinic site) endonuclease 2HZS61_015699HZS61_015700 3159386-3160144 -: HMG (high mobility group) box | domain-containing proteinHZS61_015700HZS61_015701 3160547-3161895 +: Mating type protein 1-1-2 of unknown function | domain-containing proteinHZS61_015701HZS61_015702 3162339-3163535 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinHZS61_015702HZS61_015703 3164296-3164554 -: hypothetical proteinHZS61_015703HZS61_015704 3165966-3169533 -: I/LWEQ domain | ANTH domain | domain-containing proteinHZS61_015704HZS61_015705 3171283-3171957 -: Ribosomal protein L21e | domain-containing proteinHZS61_015705HZS61_015706 3172019-3173054 +: S4 domain | Ribosomal protein S4/S9 N-terminal domain | domain-containing proteinHZS61_015706HZS61_015707 3173377-3174780 -: Pre-mRNA splicing Prp18-interacting factor | domain-containing proteinHZS61_015707HZS61_015708 3175974-3180260 +: DNA polymerase zeta catalytic subunit, DNA-directed DNA polymeraseHZS61_0157083152 kb3156 kb3160 kb3164 kb3168 kb3172 kb3176 kbCM024366
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved3155400-3156161 -annotatedHZS61_015698Cytochrome c oxidase subunit VIa | domain-containing proteinHZS61_015698 covers 100% of it on the same strand
APN2flanking_conserved3156682-3158884 +annotatedHZS61_015699DNA-(apurinic or apyrimidinic site) endonuclease 2HZS61_015699 covers 100% of it on the same strand
MAT1-1-3core_MAT3159386-3160144 -annotatedHZS61_015700HMG (high mobility group) box | domain-containing proteinHZS61_015700 covers 100% of it on the same strand
MAT1-1-2core_MAT3160547-3161895 +annotatedHZS61_015701Mating type protein 1-1-2 of unknown function | domain-containing proteinHZS61_015701 covers 100% of it on the same strand
MAT1-1-1core_MAT3162339-3163535 +annotatedHZS61_015702Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinHZS61_015702 covers 100% of it on the same strand
SLA2flanking_conserved3165966-3169533 -annotatedHZS61_015704I/LWEQ domain | ANTH domain | domain-containing proteinHZS61_015704 covers 100% of it on the same strand
MAT1-1-5core_MAT3172561-3172692 +annotatedHZS61_015706S4 domain | Ribosomal protein S4/S9 N-terminal domain | domain-containing proteinHZS61_015706 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
HZS61_0157033164296-3164554 -hypothetical protein
HZS61_0157053171283-3171957 -Ribosomal protein L21e | domain-containing protein