FoxysporumFo472020 Fusarium oxysporum Strain Fo47 2020

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, NC_072845:1240123-1255433

MATPredictFungiDBMAT1-1-5 (core_MAT) NC_072845:1240123-1240254 - identity 37.5MAT1-1-5SLA2 (flanking_conserved) NC_072845:1243280-1246848 + identity 81.6SLA2MAT1-2-1 (core_MAT) NC_072845:1250594-1251368 + identity 99.2MAT1-2-1COX13 (flanking_conserved) NC_072845:1254672-1255433 + identity 69.8COX13FOBCDRAFT_294448 1232558-1237691 -: DNA polymerase zeta catalytic subunit, DNA-directed DNA polymeraseFOBCDRAFT_294448FOBCDRAFT_225390 1237934-1239472 +: Pre-mRNA splicing Prp18-interacting factor-domain-containing proteinFOBCDRAFT_225390FOBCDRAFT_225392 1239544-1240589 -: S4 domain | Ribosomal protein S4/S9 N-terminal domain | domain-containing proteinFOBCDRAFT_225392FOBCDRAFT_225393 1240590-1241774 +: ribosomal protein L21e-domain-containing proteinFOBCDRAFT_225393FOBCDRAFT_225395 1242968-1247337 +: ANTH domain-containing proteinFOBCDRAFT_225395FOBCDRAFT_137157 1248237-1249044 -: mating type protein MAT1-2-3FOBCDRAFT_137157FOBCDRAFT_294451 1250594-1251448 +: mating type 1-2-1 proteinFOBCDRAFT_294451FOBCDRAFT_225403 1254599-1255556 +: cytochrome c oxidase, subunit VIaFOBCDRAFT_225403FOBCDRAFT_251164 1256026-1258811 +: anaphase-promoting complex subunit 5-domain-containing proteinFOBCDRAFT_251164FOBCDRAFT_225408 1258812-1260011 -: complex I intermediate-associated protein 30-domain-containing proteinFOBCDRAFT_225408FOBCDRAFT_225409 1260158-1261513 +: Large ribosomal subunit protein mL45FOBCDRAFT_2254091236 kb1240 kb1244 kb1248 kb1252 kb1256 kb1260 kbNC_072845
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-5core_MAT1240123-1240254 -annotatedFOBCDRAFT_225392S4 domain | Ribosomal protein S4/S9 N-terminal domain | domain-containing proteinFOBCDRAFT_225392 covers 100% of it on the same strand
SLA2flanking_conserved1243280-1246848 +annotatedFOBCDRAFT_225395ANTH domain-containing proteinFOBCDRAFT_225395 covers 100% of it on the same strand
MAT1-2-1core_MAT1250594-1251368 +annotatedFOBCDRAFT_294451mating type 1-2-1 proteinFOBCDRAFT_294451 covers 100% of it on the same strand
COX13flanking_conserved1254672-1255433 +annotatedFOBCDRAFT_225403cytochrome c oxidase, subunit VIaFOBCDRAFT_225403 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FOBCDRAFT_2253931240590-1241774 +ribosomal protein L21e-domain-containing protein
FOBCDRAFT_1371571248237-1249044 -mating type protein MAT1-2-3