FoxysporumFo47 Fusarium oxysporum Fo47

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, JH717900.1:789716-805026

MATPredictFungiDBMAT1-1-5 (core_MAT) JH717900.1:789716-789847 - identity 37.5MAT1-1-5SLA2 (flanking_conserved) JH717900.1:792873-796441 + identity 81.6SLA2MAT1-2-1 (core_MAT) JH717900.1:800187-800961 + identity 99.2MAT1-2-1APN2 (flanking_conserved) JH717900.1:801512-803744 - identity 86.4APN2COX13 (flanking_conserved) JH717900.1:804265-805026 + identity 69.8COX13FOZG_08368 781923-787401 -: DNA polymerase zeta subunitFOZG_08368FOZG_08369 787525-789131 +: pre-mRNA-splicing factor SLU7FOZG_08369FOZG_08370 789063-790328 -: 40S ribosomal protein S9FOZG_08370FOZG_08371 789230-791389 +: 50S ribosomal protein L21eFOZG_08371FOZG_08372 792542-797008 +: I/LWEQ domain | ANTH domain | domain-containing proteinFOZG_08372FOZG_08373 797830-798637 -: mating-type protein MAT-1FOZG_08373FOZG_08374 799721-799834 -: hypothetical proteinFOZG_08374FOZG_08375 800187-800961 +: HMG (high mobility group) box | domain-containing proteinFOZG_08375FOZG_08376 800991-801289 +: hypothetical proteinFOZG_08376FOZG_08377 801323-804054 -: AP endonuclease 2FOZG_08377FOZG_08378 804172-805342 +: cytochrome c oxidase subunit 6aFOZG_08378FOZG_08379 805437-809600 +: anaphase-promoting complex subunit 5FOZG_08379FOZG_08380 806780-809627 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinFOZG_08380FOZG_08381 809718-814110 +: Large ribosomal subunit protein mL45FOZG_08381788 kb792 kb796 kb800 kb804 kb808 kbJH717900.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-5core_MAT789716-789847 -annotatedFOZG_0837040S ribosomal protein S9FOZG_08370 covers 100% of it on the same strand
SLA2flanking_conserved792873-796441 +annotatedFOZG_08372I/LWEQ domain | ANTH domain | domain-containing proteinFOZG_08372 covers 100% of it on the same strand
MAT1-2-1core_MAT800187-800961 +annotatedFOZG_08375HMG (high mobility group) box | domain-containing proteinFOZG_08375 covers 100% of it on the same strand
APN2flanking_conserved801512-803744 -annotatedFOZG_08377AP endonuclease 2FOZG_08377 covers 100% of it on the same strand
COX13flanking_conserved804265-805026 +annotatedFOZG_08378cytochrome c oxidase subunit 6aFOZG_08378 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FOZG_08371789230-791389 +50S ribosomal protein L21e
FOZG_08373797830-798637 -mating-type protein MAT-1
FOZG_08374799721-799834 -hypothetical protein
FOZG_08376800991-801289 +hypothetical protein