Foxysporum26406 Fusarium oxysporum f. sp. melonis 26406

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, JH659339.1:1004192-1019509

MATPredictFungiDBCOX13 (flanking_conserved) JH659339.1:1004192-1004953 - identity 69.8COX13APN2 (flanking_conserved) JH659339.1:1005474-1007706 + identity 86.4APN2MAT1-2-1 (core_MAT) JH659339.1:1008257-1009031 - identity 100.0MAT1-2-1SLA2 (flanking_conserved) JH659339.1:1012777-1016344 - identity 81.6SLA2MAT1-1-5 (core_MAT) JH659339.1:1019378-1019509 + identity 37.5MAT1-1-5FOMG_13075 995107-999505 -: Large ribosomal subunit protein mL45FOMG_13075FOMG_13076 999591-1002438 +: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinFOMG_13076FOMG_13077 999618-1003781 -: anaphase-promoting complex subunit 5FOMG_13077FOMG_13078 1003876-1005046 -: cytochrome c oxidase subunit 6aFOMG_13078FOMG_13079 1005164-1007895 +: AP endonuclease 2FOMG_13079FOMG_13080 1007929-1008227 -: hypothetical proteinFOMG_13080FOMG_13081 1008257-1009031 -: HMG (high mobility group) box | domain-containing proteinFOMG_13081FOMG_13082 1009384-1009497 +: hypothetical proteinFOMG_13082FOMG_13083 1010581-1011388 +: mating-type protein MAT-1FOMG_13083FOMG_13084 1012210-1016675 -: I/LWEQ domain | ANTH domain | domain-containing proteinFOMG_13084FOMG_13085 1017836-1019995 -: 50S ribosomal protein L21eFOMG_13085FOMG_13086 1018897-1020163 +: 40S ribosomal protein S9FOMG_13086FOMG_13087 1020094-1021700 -: pre-mRNA-splicing factor SLU7FOMG_13087FOMG_13088 1021824-1027305 +: DNA polymerase zeta subunitFOMG_130881000 kb1004 kb1008 kb1012 kb1016 kb1020 kb1024 kbJH659339.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved1004192-1004953 -annotatedFOMG_13078cytochrome c oxidase subunit 6aFOMG_13078 covers 100% of it on the same strand
APN2flanking_conserved1005474-1007706 +annotatedFOMG_13079AP endonuclease 2FOMG_13079 covers 100% of it on the same strand
MAT1-2-1core_MAT1008257-1009031 -annotatedFOMG_13081HMG (high mobility group) box | domain-containing proteinFOMG_13081 covers 100% of it on the same strand
SLA2flanking_conserved1012777-1016344 -annotatedFOMG_13084I/LWEQ domain | ANTH domain | domain-containing proteinFOMG_13084 covers 100% of it on the same strand
MAT1-1-5core_MAT1019378-1019509 +partialFOMG_1308550S ribosomal protein L21eFOMG_13085 overlaps 100% but on the opposite strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FOMG_130801007929-1008227 -hypothetical protein
FOMG_130821009384-1009497 +hypothetical protein
FOMG_130831010581-1011388 +mating-type protein MAT-1
FOMG_130851017836-1019995 -50S ribosomal protein L21e