MATPredict · mating-type report

Fodoratissimumrace4

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:30 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1medium confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

medium confidence
Gene order of the MAT1-1 locus on KB726998MAT1-1 locus: genes from left to right on KB726998, 335,879 to 340,006: MAT1-1-1 (core MAT gene, minus strand); MAT1-2-7 (core MAT gene, minus strand); MAT1-1-2 (core MAT gene, minus strand); MAT1-1-3 (core MAT gene, plus strand).336 kb337 kb338 kb339 kb340 kb← 335.6 kb more to contig endcalled locusMAT1-1-1: core MAT gene, 335,879–336,997 (-), identity 98.88%, gene modelMAT1-1-1MAT1-2-7: core MAT gene, 336,533–336,751 (-), identity 30.38%, search hit onlyMAT1-2-7MAT1-1-2: core MAT gene, 337,644–338,864 (-), identity 81.73%, gene modelMAT1-1-2MAT1-1-3: core MAT gene, 339,417–340,006 (+), identity 88.75%, the two modelling tools disagreeMAT1-1-3
Gene order on KB726998. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on KB726998, 335,579 to 340,306no FungiDB gene annotated in this window
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • gene model
  • tools disagree
  • alternate model
  • search hit only
Location
KB726998:335,879–340,006 · 4.1 kb
Own genes
KB726998:335,879–340,006 · 4.1 kb
Locus
A MAT gene with no flanking gene beside it; not a full locus.
Genes modelled
3 of 4 gene hits
Nearest contig end
335.9 kb
Region (samtools)
KB726998:335879-340006
Detection pass
relaxed
Idiomorph scores
  • MAT1-1 736.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MAT1-1-1core MATgene modelexonerate1 internal stopdefective gene model98.9cov 100.0%< 1e-180736 bits335,879–336,997 -259765_880621a-1_MAT_MAT1-1none
MAT1-2-7core MAThit onlytblastn30.4cov 39.0%4.7e-0235 bits336,533–336,751 -–5158_cbs114723_MAT_unswitchednone
MAT1-1-2core MATgene modelexonerate3 frameshiftsdefective gene model81.7cov 99.8%< 1e-180569 bits337,644–338,864 -15127_mo44_MAT_MAT1-1none
MAT1-1-3core MATmodels differexonerateminiprot: 339,417–340,012, 79.1%88.8cov 99.4%8.0e-74199 bits339,417–340,006 +35127_mo44_MAT_MAT1-1none
APN2expected, not found–
SLA2expected, not found–
COX13expected, not found–

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATKB726554:1,544,751–1,546,920MAT1-2MAT1-2-11too few of the family's genes found
MATKB726987:512,163–513,754MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
Fodoratissimumrace4.genome.fasta
Assembly
840 contigs · 52.9 Mb · N50 1.9 Mb
Genome SHA-256
43ece3a8438139b8f195c428db23d7563d99ffb64928e3abbdaef377b6cde718
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 110618, 'routing_taxid_rank': 'family', 'flags': ['high_N'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 110618', 'routed_by': 'family taxid 110618 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:28:40Z
Run time
102 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits