FodoratissimumNRRL54006 Fusarium odoratissimum NRRL 54006

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, JH658294.1:286630-300779

MATPredictFungiDBSLA2 (flanking_conserved) JH658294.1:286630-290197 + identity 81.6SLA2MAT1-1-1 (core_MAT) JH658294.1:292663-293814 - identity 99.1MAT1-1-1MAT1-1-2 (core_MAT) JH658294.1:294258-295606 - identity 79.1MAT1-1-2MAT1-1-3 (core_MAT) JH658294.1:296005-296754 + identity 82.6MAT1-1-3APN2 (flanking_conserved) JH658294.1:297265-299497 - identity 86.4APN2COX13 (flanking_conserved) JH658294.1:300018-300779 + identity 69.8COX13FOIG_12009 281298-282903 +: Pre-mRNA splicing Prp18-interacting factor | domain-containing proteinFOIG_12009FOIG_12010 283003-285162 +: Ribosomal protein L21e | domain-containing proteinFOIG_12010FOIG_12011 283127-283845 -: S4 domain | Ribosomal protein S4/S9 N-terminal domain | domain-containing proteinFOIG_12011FOIG_12012 286299-290766 +: I/LWEQ domain | ANTH domain | domain-containing proteinFOIG_12012FOIG_12013 291509-292216 +: unspecified productFOIG_12013FOIG_12014 292663-293814 -: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinFOIG_12014FOIG_12015 294258-295606 -: Mating type protein 1-1-2 of unknown function | domain-containing proteinFOIG_12015FOIG_12016 296005-296754 +: HMG (high mobility group) box | domain-containing proteinFOIG_12016FOIG_12017 297076-299807 -: DNA-(apurinic or apyrimidinic site) endonuclease 2FOIG_12017FOIG_12018 299925-301095 +: Cytochrome c oxidase subunit VIa | domain-containing proteinFOIG_12018FOIG_12019 301190-305343 +: Anaphase-promoting complex subunit 5 | domain-containing proteinFOIG_12019FOIG_12020 302539-306546 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinFOIG_12020FOIG_12021 305476-309872 +: Large ribosomal subunit protein mL45FOIG_12021284 kb288 kb292 kb296 kb300 kb304 kbJH658294.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved286630-290197 +annotatedFOIG_12012I/LWEQ domain | ANTH domain | domain-containing proteinFOIG_12012 covers 100% of it on the same strand
MAT1-1-1core_MAT292663-293814 -annotatedFOIG_12014Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinFOIG_12014 covers 100% of it on the same strand
MAT1-1-2core_MAT294258-295606 -annotatedFOIG_12015Mating type protein 1-1-2 of unknown function | domain-containing proteinFOIG_12015 covers 100% of it on the same strand
MAT1-1-3core_MAT296005-296754 +annotatedFOIG_12016HMG (high mobility group) box | domain-containing proteinFOIG_12016 covers 100% of it on the same strand
APN2flanking_conserved297265-299497 -annotatedFOIG_12017DNA-(apurinic or apyrimidinic site) endonuclease 2FOIG_12017 covers 100% of it on the same strand
COX13flanking_conserved300018-300779 +annotatedFOIG_12018Cytochrome c oxidase subunit VIa | domain-containing proteinFOIG_12018 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FOIG_12013291509-292216 +unspecified product