FmangiferaeMRC7560 Fusarium mangiferae MRC7560

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, FCQH01000004:363184-376528

MATPredictFungiDBSLA2 (flanking_conserved) FCQH01000004:363184-366764 + identity 81.6SLA2MAT1-2-1 (core_MAT) FCQH01000004:371702-372476 + identity 89.7MAT1-2-1APN2 (flanking_conserved) FCQH01000004:373242-375255 - identity 86.4APN2COX13 (flanking_conserved) FCQH01000004:375767-376528 + identity 70.7COX13FMAN_08689 357918-359321 +: Pre-mRNA splicing Prp18-interacting factor | domain-containing proteinFMAN_08689FMAN_08690 359651-360369 -: S4 domain | Ribosomal protein S4/S9 N-terminal domain | domain-containing proteinFMAN_08690FMAN_08691 360759-361433 +: Ribosomal protein L21e | domain-containing proteinFMAN_08691FMAN_08692 363184-366764 +: I/LWEQ domain | ANTH domain | domain-containing proteinFMAN_08692FMAN_08693 369341-370103 -: unspecified productFMAN_08693FMAN_08694 371702-372476 +: HMG (high mobility group) box | domain-containing proteinFMAN_08694FMAN_08695 373242-375255 -: Endonuclease/Exonuclease/phosphatase family | domain-containing proteinFMAN_08695FMAN_08696 375767-376528 +: Cytochrome c oxidase subunit VIa | domain-containing proteinFMAN_08696FMAN_08697 377373-379831 +: Anaphase-promoting complex subunit 5 | domain-containing proteinFMAN_08697FMAN_08698 380029-380867 -: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinFMAN_08698FMAN_08699 381358-382383 +: Large ribosomal subunit protein mL45FMAN_08699360 kb362 kb364 kb366 kb368 kb370 kb372 kb374 kb376 kb378 kb380 kbFCQH01000004
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved363184-366764 +annotatedFMAN_08692I/LWEQ domain | ANTH domain | domain-containing proteinFMAN_08692 covers 100% of it on the same strand
MAT1-2-1core_MAT371702-372476 +annotatedFMAN_08694HMG (high mobility group) box | domain-containing proteinFMAN_08694 covers 100% of it on the same strand
APN2flanking_conserved373242-375255 -annotatedFMAN_08695Endonuclease/Exonuclease/phosphatase family | domain-containing proteinFMAN_08695 covers 100% of it on the same strand
COX13flanking_conserved375767-376528 +annotatedFMAN_08696Cytochrome c oxidase subunit VIa | domain-containing proteinFMAN_08696 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
FMAN_08693369341-370103 -unspecified product