FfulvaRace5_Kim Fulvia fulva Race5 Kim

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, CP090175:336792-344483

MATPredictFungiDBMAT1-2-1 (core_MAT) CP090175:336792-338101 - identity 74.5MAT1-2-1APN2 (flanking_conserved) CP090175:342421-344483 - identity 86.4APN2CLAFUR5_14197 334934-335293 +: hypothetical proteinCLAFUR5_14197CLAFUR5_14198 335869-336490 +: hypothetical proteinCLAFUR5_14198CLAFUR5_14199 336792-338101 -: MAT+ sexual cell fertilization-promoting factorCLAFUR5_14199CLAFUR5_14200 338426-339357 +: hypothetical proteinCLAFUR5_14200CLAFUR5_14201 342421-344483 -: DNA-(apurinic or apyrimidinic site) endonuclease 2CLAFUR5_14201CLAFUR5_14202 344776-347135 +: Anaphase-promoting complex subunit 5CLAFUR5_14202CLAFUR5_14203 347434-348672 +: Haloacid dehalogenase-like hydrolase | HAD-hyrolase-like | domain-containing proteinCLAFUR5_14203CLAFUR5_14204 349481-350947 +: hypothetical proteinCLAFUR5_14204332 kb334 kb336 kb338 kb340 kb342 kb344 kb346 kb348 kbCP090175
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-2-1core_MAT336792-338101 -annotatedCLAFUR5_14199MAT+ sexual cell fertilization-promoting factorCLAFUR5_14199 covers 100% of it on the same strand
APN2flanking_conserved342421-344483 -annotatedCLAFUR5_14201DNA-(apurinic or apyrimidinic site) endonuclease 2CLAFUR5_14201 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CLAFUR5_14200338426-339357 +hypothetical protein