EdermatitidisNIHUT8656 Exophiala dermatitidis NIH/UT8656

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, JH226137:289121-308133

MATPredictFungiDBSLA2 (flanking_conserved) JH226137:289121-292377 + identity 83.6SLA2MAT1-2-1 (core_MAT) JH226137:303111-304250 + identity 68.9MAT1-2-1APN2 (flanking_conserved) JH226137:306174-308133 - identity 93.2APN2HMPREF1120_08857 283752-288695 -: Pre-mRNA splicing Prp18-interacting factor | domain-containing proteinHMPREF1120_08857HMPREF1120_08858 285447-286334 +: unspecified productHMPREF1120_08858HMPREF1120_08859 289121-292377 +: huntingtin interacting protein 1HMPREF1120_08859HMPREF1120_08860 293343-295924 -: unspecified productHMPREF1120_08860HMPREF1120_09286 295802-295917 +: 5S ribosomal RNAHMPREF1120_09286HMPREF1120_08861 299296-300103 -: unspecified productHMPREF1120_08861HMPREF1120_08862 303111-304250 +: HMG (high mobility group) box | domain-containing proteinHMPREF1120_08862HMPREF1120_08863 305794-308458 -: AP endonuclease 2HMPREF1120_08863HMPREF1120_08864 308976-318584 +: Vacuolar-sorting associated protein 13, adaptor binding domain | VPS13-like family middle region | VPS13-like family N-terminal region | Intermembrane lipid transfer protein VPS13, C-terminal | domain-containing proteinHMPREF1120_08864288 kb292 kb296 kb300 kb304 kb308 kb312 kbJH226137
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved289121-292377 +annotatedHMPREF1120_08859huntingtin interacting protein 1HMPREF1120_08859 covers 100% of it on the same strand
MAT1-2-1core_MAT303111-304250 +annotatedHMPREF1120_08862HMG (high mobility group) box | domain-containing proteinHMPREF1120_08862 covers 100% of it on the same strand
APN2flanking_conserved306174-308133 -annotatedHMPREF1120_08863AP endonuclease 2HMPREF1120_08863 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
HMPREF1120_08860293343-295924 -unspecified product
HMPREF1120_09286295802-295917 +5S ribosomal RNA
HMPREF1120_08861299296-300103 -unspecified product