CtropicalisMYA3404 Candida tropicalis MYA-3404

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MTL_0: alpha Ascomycota:MTL, confidence high, GG692402:177475-186091

MATPredictFungiDBPAP1 (flanking_variable) GG692402:177475-179151 + identity 81.5PAP1MTLalpha1 (core_MAT) GG692402:179194-179775 - identity 61.5MTLalpha1PIK1 (flanking_variable) GG692402:180101-183022 - identity 70.0PIK1OBP1 (flanking_variable) GG692402:183279-184568 - identity 82.8OBP1MTLalpha2 (core_MAT) GG692402:185474-186091 + identity 46.3MTLalpha2CTRG_05296 171190-173538 -: F-box domain | Exocyst complex component Sec10-like, alpha-helical bundle | domain-containing proteinCTRG_05296CTRG_05297 173707-175893 +: predicted proteinCTRG_05297CTRG_05298 177475-179151 +: Poly(A) polymerase PAPalphaCTRG_05298CTRG_05299 179194-179775 -: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCTRG_05299CTRG_05300 180101-183022 -: phosphatidylinositol 4-kinase PIK1alphaCTRG_05300CTRG_05301 183279-184568 -: Oxysterol-binding protein | domain-containing proteinCTRG_05301CTRG_05302 185474-186091 +: Homeobox KN domain | domain-containing proteinCTRG_05302CTRG_05303 186525-188249 -: Amino acid permease | domain-containing proteinCTRG_05303174 kb176 kb178 kb180 kb182 kb184 kb186 kb188 kb190 kbGG692402
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
PAP1flanking_variable177475-179151 +annotatedCTRG_05298Poly(A) polymerase PAPalphaCTRG_05298 covers 100% of it on the same strand
MTLalpha1core_MAT179194-179775 -annotatedCTRG_05299Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCTRG_05299 covers 100% of it on the same strand
PIK1flanking_variable180101-183022 -annotatedCTRG_05300phosphatidylinositol 4-kinase PIK1alphaCTRG_05300 covers 100% of it on the same strand
OBP1flanking_variable183279-184568 -annotatedCTRG_05301Oxysterol-binding protein | domain-containing proteinCTRG_05301 covers 100% of it on the same strand
MTLalpha2core_MAT185474-186091 +annotatedCTRG_05302Homeobox KN domain | domain-containing proteinCTRG_05302 covers 100% of it on the same strand

Ascomycota_MTL_1: A Ascomycota:MTL, confidence high, GG692408:754-8933

MATPredictFungiDBPAP1 (flanking_variable) GG692408:754-2427 - identity 82.9PAP1OBP1 (flanking_variable) GG692408:2826-4106 + identity 81.8OBP1PIK1 (flanking_variable) GG692408:4383-7229 + identity 73.3PIK1MTLA2 (core_MAT) GG692408:7360-8021 + identity 50.0MTLA2MTLA1 (core_MAT) GG692408:8487-8933 + identity 55.1MTLA1CTRG_06235 12-395 +: Amino acid permease | domain-containing proteinCTRG_06235CTRG_06236 754-2427 -: Poly(A) polymerase PAPaCTRG_06236CTRG_06237 2826-4106 +: Oxysterol-binding protein | domain-containing proteinCTRG_06237CTRG_06238 4383-7229 +: phosphatidylinositol 4-kinase PIK1aCTRG_06238CTRG_06239 8487-8933 +: Homeodomain | domain-containing proteinCTRG_06239CTRG_06240 9143-11329 -: predicted proteinCTRG_06240CTRG_06241 11500-12816 +: F-box domain | Exocyst complex component Sec10-like, alpha-helical bundle | domain-containing proteinCTRG_06241-4 kb-2 kb0 kb2 kb4 kb6 kb8 kb10 kb12 kbGG692408
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
PAP1flanking_variable754-2427 -annotatedCTRG_06236Poly(A) polymerase PAPaCTRG_06236 covers 100% of it on the same strand
OBP1flanking_variable2826-4106 +annotatedCTRG_06237Oxysterol-binding protein | domain-containing proteinCTRG_06237 covers 100% of it on the same strand
PIK1flanking_variable4383-7229 +annotatedCTRG_06238phosphatidylinositol 4-kinase PIK1aCTRG_06238 covers 100% of it on the same strand
MTLA2core_MAT7360-8021 +novel—no FungiDB gene overlaps this MATPredict gene
MTLA1core_MAT8487-8933 +annotatedCTRG_06239Homeodomain | domain-containing proteinCTRG_06239 covers 100% of it on the same strand