CtropicalisMYA3404-2020 Candida tropicalis MYA-3404 2020

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MTL_0: alpha Ascomycota:MTL, confidence high, CP047873:1047566-1056179

MATPredictFungiDBMTLalpha2 (core_MAT) CP047873:1047566-1048180 - identity 46.3MTLalpha2OBP1 (flanking_variable) CP047873:1049086-1050372 + identity 82.8OBP1PIK1 (flanking_variable) CP047873:1050632-1053550 + identity 70.0PIK1MTLalpha1 (core_MAT) CP047873:1053879-1054457 + identity 61.5MTLalpha1PAP1 (flanking_variable) CP047873:1054506-1056179 - identity 81.5PAP1CTMYA2_056770 1045405-1047126 +: Amino acid permease | domain-containing proteinCTMYA2_056770CTMYA2_056780 1047566-1048180 -: Homeobox KN domain | domain-containing proteinCTMYA2_056780CTMYA2_056790 1049086-1050372 +: Oxysterol-binding protein | domain-containing proteinCTMYA2_056790CTMYA2_056800 1050632-1053550 +: Phosphoinositide 3-kinase family, accessory domain (PIK domain) | Yeast phosphatidylinositol-4-OH kinase Pik1 | Phosphatidylinositol 3- and 4-kinase | domain-containing proteinCTMYA2_056800CTMYA2_056810 1053879-1054457 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCTMYA2_056810CTMYA2_056820 1054506-1056179 -: Poly(A) polymerase nucleotidyltransferase domain | Poly(A) polymerase predicted RNA binding domain | Poly(A) polymerase central domain | domain-containing proteinCTMYA2_056820CTMYA2_056830 1057764-1059947 -: unspecified productCTMYA2_056830CTMYA2_056840 1060116-1062461 +: F-box domain | Exocyst complex component Sec10-like, alpha-helical bundle | domain-containing proteinCTMYA2_0568401044 kb1046 kb1048 kb1050 kb1052 kb1054 kb1056 kb1058 kb1060 kbCP047873
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MTLalpha2core_MAT1047566-1048180 -annotatedCTMYA2_056780Homeobox KN domain | domain-containing proteinCTMYA2_056780 covers 100% of it on the same strand
OBP1flanking_variable1049086-1050372 +annotatedCTMYA2_056790Oxysterol-binding protein | domain-containing proteinCTMYA2_056790 covers 100% of it on the same strand
PIK1flanking_variable1050632-1053550 +annotatedCTMYA2_056800Phosphoinositide 3-kinase family, accessory domain (PIK domain) | Yeast phosphatidylinositol-4-OH kinase Pik1 | Phosphatidylinositol 3- and 4-kinase | domain-containing proteinCTMYA2_056800 covers 100% of it on the same strand
MTLalpha1core_MAT1053879-1054457 +annotatedCTMYA2_056810Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCTMYA2_056810 covers 100% of it on the same strand
PAP1flanking_variable1054506-1056179 -annotatedCTMYA2_056820Poly(A) polymerase nucleotidyltransferase domain | Poly(A) polymerase predicted RNA binding domain | Poly(A) polymerase central domain | domain-containing proteinCTMYA2_056820 covers 100% of it on the same strand