MATPredict · mating-type report

CposadasiiRMSCC3488

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:28 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on DS268109MAT1-1 locus: genes from left to right on DS268109, 6,873,152 to 6,885,952: SLA2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, minus strand); MAT1-1-4 (core MAT gene, minus strand); APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand).6,875 kb6,880 kb6,885 kb983.5 kb more to contig end →called locusSLA2: conserved flank, 6,873,152–6,877,087 (+), identity 99.8%, search hit onlySLA2MAT1-1-1: core MAT gene, 6,879,184–6,880,406 (-), identity 100.0%, search hit onlyMAT1-1-1MAT1-1-4: core MAT gene, 6,880,836–6,882,041 (-), identity 100.0%, search hit onlyMAT1-1-4APN2: conserved flank, 6,882,830–6,884,655 (-), identity 99.8%, search hit onlyAPN2COX13: conserved flank, 6,885,257–6,885,952 (+), identity 100.0%, search hit onlyCOX13
Gene order on DS268109. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on DS268109, 6,872,513 to 6,886,592CPAG_02484 6,869,691-6,872,750 (+): Pleckstrin homology domain | Maintenance of mitochondrial morphology protein 1 | domain-containing proteinCPAG_02484CPAG_02485 6,872,956-6,877,465 (+): huntingtin-interacting protein 1CPAG_02485CPAG_02486 6,878,205-6,878,630 (+): hypothetical proteinCPAG_02486CPAG_02487 6,879,184-6,880,406 (-): mating-type protein MAT-1CPAG_02487CPAG_02488 6,880,836-6,882,041 (-): hypothetical proteinCPAG_02488CPAG_02489 6,882,830-6,884,655 (-): DNA-(apurinic or apyrimidinic site) lyase 2CPAG_02489CPAG_02490 6,885,257-6,885,952 (+): Cytochrome c oxidase subunit VIa | domain-containing proteinCPAG_02490
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
DS268109:6,873,152–6,885,952 · 12.8 kb
Own genes
DS268109:6,873,152–6,885,952 · 12.8 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
5 of 5 gene hits
Nearest contig end
984.1 kb
Region (samtools)
DS268109:6873152-6885952
Idiomorph scores
  • MAT1-1 751.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
SLA2conserved flankhit onlyDIAMOND, proteome99.8cov 100.0%< 1e-1801,808 bits6,873,152–6,877,087 +–5501_rs_MAT_MAT1-2CPAG_02485
MAT1-1-1core MAThit onlyDIAMOND, proteome100.0cov 100.0%7.6e-280751 bits6,879,184–6,880,406 -–199306_rmscc1040_MAT_MAT1-1CPAG_02487
MAT1-1-4core MAThit onlyDIAMOND, proteome100.0cov 72.4%1.2e-128358 bits6,880,836–6,882,041 -–199306_rmscc1040_MAT_MAT1-1CPAG_02488
APN2conserved flankhit onlyDIAMOND, proteome99.8cov 95.0%< 1e-1801,171 bits6,882,830–6,884,655 -–199306_rmscc1040_MAT_MAT1-1CPAG_02489
COX13conserved flankhit onlyDIAMOND, proteome100.0cov 100.0%3.4e-91254 bits6,885,257–6,885,952 +–199306_rmscc1040_MAT_MAT1-1CPAG_02490

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATDS268109:4,140,512–4,142,617MAT1-2MAT1-2-1, MAT1-2-41too few of the family's genes found

Provenance

Genome file
CposadasiiRMSCC3488.genome.fasta
Assembly
9 contigs · 28.2 Mb · N50 4.4 Mb
Genome SHA-256
61b9d0c8b87e1b9008dbddea4c1c7b31b9f9abbaaf05b0c0a798537891199a34
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 33184, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 33184', 'routed_by': 'family taxid 33184 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:27:44Z
Run time
47 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits