CneoformansKN99 Cryptococcus neoformans KN99
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CP022325.1:183859-286720
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| FAO1 | flanking_conserved | 183859-185218 + | partial | CKF44_06816 | Cytidine and deoxycytidylate deaminase zinc-binding region | domain-containing protein | CKF44_06816 overlaps 100% but on the opposite strand |
| SXI1 | core_MAT | 185988-187349 + | annotated | CKF44_06814 | Homeobox KN domain | domain-containing protein | CKF44_06814 covers 100% of it on the same strand |
| STE3 | core_MAT | 208374-209695 - | annotated | CKF44_06808 | pheromone a factor receptor | CKF44_06808 covers 100% of it on the same strand |
| MFalpha | core_MAT | 222931-223047 + | annotated | CKF44_07407 | fungal mating-type pheromone | CKF44_07407 covers 100% of it on the same strand |
| RPL39 | core_MAT | 270550-271048 + | annotated | CKF44_01455 | large subunit ribosomal protein L39 | CKF44_01455 covers 100% of it on the same strand |
| PAN6 | flanking_conserved | 284943-286720 + | annotated | CKF44_07414 | pantoate-beta-alanine ligase | CKF44_07414 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| CKF44_06816 | 182119-185466 - | Cytidine and deoxycytidylate deaminase zinc-binding region | domain-containing protein |
| CKF44_06813 | 189560-192241 - | Glycosyl transferase family 90 | domain-containing protein |
| CKF44_06812 | 193324-200779 - | phospholipase D |
| CKF44_06811 | 200909-202001 + | large subunit ribosomal protein L22e |
| CKF44_06810 | 202602-204039 + | hypothetical protein |
| CKF44_06809 | 204044-207447 - | IKS protein kinase |
| CKF44_06807 | 210557-211580 - | hypothetical protein |
| CKF44_06806 | 212068-213909 + | electron transfer flavoprotein alpha subunit |
| CKF44_06805 | 214530-215070 + | hypothetical protein |
| CKF44_06804 | 215850-219594 - | BTB/POZ domain | domain-containing protein |
| CKF44_07406 | 222288-222701 - | pheromone alpha |
| CKF44_06971 | 223846-230310 + | IQ calmodulin-binding motif | DIL domain | Myosin head (motor domain) | domain-containing protein |
| CKF44_07408 | 230211-233167 - | STE/STE20/PAKA protein kinase |
| CKF44_06980 | 233496-238299 + | STE/STE11 protein kinase |
| CKF44_07409 | 238263-242729 - | DNA-directed RNA polymerase, mitochondrial |
| CKF44_07005 | 242901-246213 + | hypothetical protein |
| CKF44_07004 | 244073-247927 - | dihydrolipoyl dehydrogenase |
| CKF44_07410 | 248015-251440 - | Cid1 family poly A polymerase | Poly(A) RNA polymerase, mitochondrial-like, central palm domain | domain-containing protein |
| CKF44_07015 | 251935-255597 - | RhoGEF domain | domain-containing protein |
| CKF44_07411 | 256515-263236 + | histone demethylase JARID1 |
| CKF44_01457 | 263567-266561 + | Slx4 endonuclease | domain-containing protein |
| CKF44_01456 | 267859-269211 + | hypothetical protein |
| CKF44_01454 | 271944-275730 - | transcription factor STE12 |
| CKF44_07412 | 277218-277511 - | hypothetical protein |
| CKF44_01452 | 280007-281233 + | hypothetical protein |
| CKF44_01451 | 280948-281513 - | hypothetical protein |
| CKF44_07413 | 281653-284758 + | nucleolar GTP-binding protein 2 |