CneoformansH99 Cryptococcus neoformans H99

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CP003824.1:183859-286720

MATPredictFungiDBFAO1 (flanking_conserved) CP003824.1:183859-185218 + identity 94.4FAO1SXI1 (core_MAT) CP003824.1:185988-187349 + identity 80.7SXI1STE3 (core_MAT) CP003824.1:208374-209695 - identity 94.5STE3MFalpha (core_MAT) CP003824.1:222931-223047 + identity 86.8MFalphaRPL39 (core_MAT) CP003824.1:270550-271048 + identity 100.0RPL39PAN6 (flanking_conserved) CP003824.1:284943-286720 + identity 92.0PAN6CNAG_06817 UAP1 178722-181616 -: uric acid xanthine permeaseCNAG_06817 UAP1CNAG_06816 182119-185466 -: Cytidine and deoxycytidylate deaminase zinc-binding region | domain-containing proteinCNAG_06816CNAG_12420 182123-183182 +: unspecified productCNAG_12420CNAG_06815 FAO1 183564-185652 +: putative fatty alcohol oxidaseCNAG_06815 FAO1CNAG_06814 SXI1alpha 185700-188859 +: Alpha cell-type homeodomain transcription factorCNAG_06814 SXI1alphaCNAG_12421 185870-187569 -: unspecified productCNAG_12421CNAG_12422 189214-189533 +: unspecified productCNAG_12422CNAG_06813 CAP1alpha 189560-192241 -: O-glucosyltransferase, putativeCNAG_06813 CAP1alphaCNAG_12423 192372-192704 -: unspecified productCNAG_12423CNAG_12424 192935-194380 +: unspecified productCNAG_12424CNAG_06812 SPO14alpha 193324-200779 -: phospholipase DCNAG_06812 SPO14alphaCNAG_06811 RPL22alpha 200909-202001 +: large subunit ribosomal protein L22eCNAG_06811 RPL22alphaCNAG_06810 202602-204039 +: hypothetical proteinCNAG_06810CNAG_06809 IKS1 204044-207447 -: IKS protein kinaseCNAG_06809 IKS1CNAG_12425 207817-208498 +: unspecified productCNAG_12425CNAG_06808 STE3alpha 208236-209840 -: pheromone a factor receptorCNAG_06808 STE3alphaCNAG_06807 210557-211580 -: hypothetical proteinCNAG_06807CNAG_06806 ETF1alpha 212068-213909 +: electron transfer flavoprotein alpha subunitCNAG_06806 ETF1alphaCNAG_12426 214174-214705 -: unspecified productCNAG_12426CNAG_06805 214530-215070 +: hypothetical proteinCNAG_06805CNAG_06804 BSP3 215850-219594 -: BTP/PZ domain-containing proteinCNAG_06804 BSP3CNAG_07406 222288-222701 -: pheromone alphaCNAG_07406CNAG_07407 MFalpha3 222704-223314 +: fungal mating-type pheromoneCNAG_07407 MFalpha3CNAG_12427 223329-223829 +: unspecified productCNAG_12427CNAG_06971 MYO2alpha 223846-230310 +: myosin class v heavy chainCNAG_06971 MYO2alphaCNAG_07408 STE20alpha 230211-233167 -: non-specific serine/threonine protein kinaseCNAG_07408 STE20alphaCNAG_06980 STE11alpha 233496-238299 +: STE/STE11 protein kinaseCNAG_06980 STE11alphaCNAG_07409 RPO41alpha 238263-242729 -: DNA-directed RNA polymerase, mitochondrialCNAG_07409 RPO41alphaCNAG_07005 BSP2 242901-246213 +: Armadillo/beta-catenin repeat proteinCNAG_07005 BSP2CNAG_07004 LPD1alpha 244073-247927 -: dihydrolipoyl dehydrogenaseCNAG_07004 LPD1alphaCNAG_07410 CID1alpha 248015-251440 -: CID1-family polyA polymeraseCNAG_07410 CID1alphaCNAG_07015 251935-255597 -: RhoGEF domain | domain-containing proteinCNAG_07015CNAG_07411 RUM1alpha 256515-263236 +: histone demethylase JARID1CNAG_07411 RUM1alphaCNAG_01457 BSP1 263567-266561 +: Structure-specific endonuclease subunit SLX4CNAG_01457 BSP1CNAG_01456 267859-269211 +: unspecified productCNAG_01456CNAG_12428 269260-270268 -: unspecified productCNAG_12428CNAG_01455 RPL39alpha 270518-271941 +: large subunit ribosomal protein L39CNAG_01455 RPL39alphaCNAG_01454 STE12alpha 271944-275730 -: transcription factor STE12CNAG_01454 STE12alphaCNAG_12429 276399-277159 +: unspecified productCNAG_12429CNAG_07412 277218-277511 -: hypothetical proteinCNAG_07412CNAG_01452 MAT3 280007-281233 +: mat3 pheromone repeat proteinCNAG_01452 MAT3CNAG_01451 280948-281513 -: hypothetical proteinCNAG_01451CNAG_07413 NOG2 281653-284758 +: nucleolar GTP-binding protein 2CNAG_07413 NOG2CNAG_07414 PAN6 284872-286790 +: pantoate-beta-alanine ligaseCNAG_07414 PAN6CNAG_01448 286747-290119 -: hypothetical proteinCNAG_01448CNAG_01446 HSP12 290468-291329 -: heat shock protein, 12KdaCNAG_01446 HSP12CNAG_01445 APG9 291364-295513 -: autophagy-like protein 9CNAG_01445 APG9180 kb190 kb200 kb210 kb220 kb230 kb240 kb250 kb260 kb270 kb280 kb290 kbCP003824.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
FAO1flanking_conserved183859-185218 +partialCNAG_06816Cytidine and deoxycytidylate deaminase zinc-binding region | domain-containing proteinCNAG_06816 overlaps 100% but on the opposite strand
SXI1core_MAT185988-187349 +annotatedCNAG_06814 SXI1alphaAlpha cell-type homeodomain transcription factorCNAG_06814 covers 100% of it on the same strand
STE3core_MAT208374-209695 -annotatedCNAG_06808 STE3alphapheromone a factor receptorCNAG_06808 covers 100% of it on the same strand
MFalphacore_MAT222931-223047 +annotatedCNAG_07407 MFalpha3fungal mating-type pheromoneCNAG_07407 covers 100% of it on the same strand
RPL39core_MAT270550-271048 +annotatedCNAG_01455 RPL39alphalarge subunit ribosomal protein L39CNAG_01455 covers 100% of it on the same strand
PAN6flanking_conserved284943-286720 +annotatedCNAG_07414 PAN6pantoate-beta-alanine ligaseCNAG_07414 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CNAG_06816182119-185466 -Cytidine and deoxycytidylate deaminase zinc-binding region | domain-containing protein
CNAG_12421185870-187569 -unspecified product
CNAG_12422189214-189533 +unspecified product
CNAG_06813 CAP1alpha189560-192241 -O-glucosyltransferase, putative
CNAG_12423192372-192704 -unspecified product
CNAG_12424192935-194380 +unspecified product
CNAG_06812 SPO14alpha193324-200779 -phospholipase D
CNAG_06811 RPL22alpha200909-202001 +large subunit ribosomal protein L22e
CNAG_06810202602-204039 +hypothetical protein
CNAG_06809 IKS1204044-207447 -IKS protein kinase
CNAG_12425207817-208498 +unspecified product
CNAG_06807210557-211580 -hypothetical protein
CNAG_06806 ETF1alpha212068-213909 +electron transfer flavoprotein alpha subunit
CNAG_12426214174-214705 -unspecified product
CNAG_06805214530-215070 +hypothetical protein
CNAG_06804 BSP3215850-219594 -BTP/PZ domain-containing protein
CNAG_07406222288-222701 -pheromone alpha
CNAG_12427223329-223829 +unspecified product
CNAG_06971 MYO2alpha223846-230310 +myosin class v heavy chain
CNAG_07408 STE20alpha230211-233167 -non-specific serine/threonine protein kinase
CNAG_06980 STE11alpha233496-238299 +STE/STE11 protein kinase
CNAG_07409 RPO41alpha238263-242729 -DNA-directed RNA polymerase, mitochondrial
CNAG_07005 BSP2242901-246213 +Armadillo/beta-catenin repeat protein
CNAG_07004 LPD1alpha244073-247927 -dihydrolipoyl dehydrogenase
CNAG_07410 CID1alpha248015-251440 -CID1-family polyA polymerase
CNAG_07015251935-255597 -RhoGEF domain | domain-containing protein
CNAG_07411 RUM1alpha256515-263236 +histone demethylase JARID1
CNAG_01457 BSP1263567-266561 +Structure-specific endonuclease subunit SLX4
CNAG_01456267859-269211 +unspecified product
CNAG_12428269260-270268 -unspecified product
CNAG_01454 STE12alpha271944-275730 -transcription factor STE12
CNAG_12429276399-277159 +unspecified product
CNAG_07412277218-277511 -hypothetical protein
CNAG_01452 MAT3280007-281233 +mat3 pheromone repeat protein
CNAG_01451280948-281513 -hypothetical protein
CNAG_07413 NOG2281653-284758 +nucleolar GTP-binding protein 2