CmilitarisCM01 Cordyceps militaris CM01

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, JH126403:408101-424848

MATPredictFungiDBSLA2 (flanking_conserved) JH126403:408101-411477 + identity 79.8SLA2MAT1-2-1 (core_MAT) JH126403:414110-414247 + identity 30.435MAT1-2-1MAT1-1-1 (core_MAT) JH126403:416720-418199 - identity 49.6MAT1-1-1MAT1-1-2 (core_MAT) JH126403:418978-420043 - identity 29.1MAT1-1-2APN2 (flanking_conserved) JH126403:421423-423635 - identity 88.6APN2COX13 (flanking_conserved) JH126403:424086-424848 + identity 66.9COX13CCM_06520 400946-407328 +: ankyrin 2,3/unc44, putativeCCM_06520CCM_06521 408101-411477 +: cytoskeleton assembly control protein Sla2CCM_06521CCM_06522 414324-416443 +: unspecified productCCM_06522CCM_06523 416720-418199 -: mating-type protein MAT 1-1-1CCM_06523CCM_09679 418978-420043 -: mating-type protein MAT 1-1-2CCM_09679CCM_06524 421423-423635 -: DNA lyaseCCM_06524CCM_06525 424086-424848 +: Cytochrome c oxidase, subunit VIaCCM_06525CCM_06526 425473-427932 +: anaphase-promoting complex subunit Apc5, putativeCCM_06526CCM_06527 428136-428974 -: complex I intermediate-associated protein 30CCM_06527CCM_06528 429600-430662 +: unspecified productCCM_06528404 kb408 kb412 kb416 kb420 kb424 kb428 kbJH126403
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved408101-411477 +annotatedCCM_06521cytoskeleton assembly control protein Sla2CCM_06521 covers 100% of it on the same strand
MAT1-2-1core_MAT414110-414247 +novel—no FungiDB gene overlaps this MATPredict gene
MAT1-1-1core_MAT416720-418199 -annotatedCCM_06523mating-type protein MAT 1-1-1CCM_06523 covers 100% of it on the same strand
MAT1-1-2core_MAT418978-420043 -annotatedCCM_09679mating-type protein MAT 1-1-2CCM_09679 covers 100% of it on the same strand
APN2flanking_conserved421423-423635 -annotatedCCM_06524DNA lyaseCCM_06524 covers 100% of it on the same strand
COX13flanking_conserved424086-424848 +annotatedCCM_06525Cytochrome c oxidase, subunit VIaCCM_06525 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CCM_06522414324-416443 +unspecified product