ClusitaniaeATCC42720 Clavispora lusitaniae ATCC 42720

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MTL_0: alpha Ascomycota:MTL, confidence high, CH408081:200484-207399

MATPredictFungiDBPAP1 (flanking_variable) CH408081:200484-202157 + identity 76.6PAP1MTLalpha1 (core_MAT) CH408081:202174-202641 - identity 38.7MTLalpha1PIK1 (flanking_variable) CH408081:202826-205609 - identity 66.0PIK1OBP1 (flanking_variable) CH408081:206185-207399 - identity 68.0OBP1CLUG_04919 193909-196368 -: Exocyst complex component Sec10-like, alpha-helical bundle | F-box domain | domain-containing proteinCLUG_04919CLUG_04920 197828-200389 +: hypothetical proteinCLUG_04920CLUG_04921 198792-199289 +: predicted proteinCLUG_04921CLUG_04922 200484-202157 +: polynucleotide adenylyltransferaseCLUG_04922CLUG_04923 202174-202641 -: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCLUG_04923CLUG_04924 202826-205609 -: 1-phosphatidylinositol 4-kinaseCLUG_04924CLUG_04925 206185-207399 -: Oxysterol-binding protein | domain-containing proteinCLUG_04925CLUG_04926 208512-210101 +: hypothetical proteinCLUG_04926CLUG_04927 208614-210104 -: Insulinase (Peptidase family M16) | Peptidase M16 inactive domain | domain-containing proteinCLUG_04927CLUG_04928 212006-213568 -: Protein arginine N-methyltransferase 2CLUG_04928196 kb198 kb200 kb202 kb204 kb206 kb208 kb210 kb212 kbCH408081
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
PAP1flanking_variable200484-202157 +annotatedCLUG_04922polynucleotide adenylyltransferaseCLUG_04922 covers 100% of it on the same strand
MTLalpha1core_MAT202174-202641 -annotatedCLUG_04923Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCLUG_04923 covers 100% of it on the same strand
PIK1flanking_variable202826-205609 -annotatedCLUG_049241-phosphatidylinositol 4-kinaseCLUG_04924 covers 100% of it on the same strand
OBP1flanking_variable206185-207399 -annotatedCLUG_04925Oxysterol-binding protein | domain-containing proteinCLUG_04925 covers 100% of it on the same strand