CkikuchiiMAFF305040 Cercospora kikuchii MAFF 305040

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence medium, NW_025408582:3566002-3587232

MATPredictFungiDBMAT1-1-1 (core_MAT) NW_025408582:3566002-3567165 + identity 55.0MAT1-1-1COX13 (flanking_conserved) NW_025408582:3586383-3587232 + identity 66.7COX13CKM354_000136800 3563549-3564641 -: uncharacterized proteinCKM354_000136800CKM354_000136900 3566002-3567165 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCKM354_000136900CKM354_000137000 3567437-3568137 +: uncharacterized proteinCKM354_000137000CKM354_000137100 3568856-3572218 +: uncharacterized proteinCKM354_000137100CKM354_000137200 3572353-3573994 -: Alcohol dehydrogenase GroES-like domain | Zinc-binding dehydrogenase | domain-containing proteinCKM354_000137200CKM354_000137300 3574611-3576224 +: Cytochrome P450 | domain-containing proteinCKM354_000137300CKM354_000137400 3576484-3577764 -: Haloacid dehalogenase-like hydrolase | HAD-hyrolase-like | domain-containing proteinCKM354_000137400CKM354_000137500 3578075-3581143 -: chromatin-remodeling protein SPT16CKM354_000137500CKM354_000137600 3581597-3582944 +: Mitochondrial carrier protein | domain-containing proteinCKM354_000137600CKM354_000137700 3582965-3583490 -: uncharacterized proteinCKM354_000137700CKM354_000137800 3584636-3585988 -: uncharacterized proteinCKM354_000137800CKM354_000137900 3586383-3587232 +: cytochrome c oxidase subunit VIaCKM354_000137900CKM354_000138000 3587916-3590824 -: dolichyl-phosphate-mannose-protein mannosyltransferaseCKM354_000138000CKM354_000138100 3591429-3592994 +: Pre-mRNA splicing factor PRP21 like protein | Surp module | domain-containing proteinCKM354_0001381003564 kb3568 kb3572 kb3576 kb3580 kb3584 kb3588 kb3592 kbNW_025408582
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT3566002-3567165 +annotatedCKM354_000136900Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinCKM354_000136900 covers 100% of it on the same strand
COX13flanking_conserved3586383-3587232 +annotatedCKM354_000137900cytochrome c oxidase subunit VIaCKM354_000137900 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CKM354_0001370003567437-3568137 +uncharacterized protein
CKM354_0001371003568856-3572218 +uncharacterized protein
CKM354_0001372003572353-3573994 -Alcohol dehydrogenase GroES-like domain | Zinc-binding dehydrogenase | domain-containing protein
CKM354_0001373003574611-3576224 +Cytochrome P450 | domain-containing protein
CKM354_0001374003576484-3577764 -Haloacid dehalogenase-like hydrolase | HAD-hyrolase-like | domain-containing protein
CKM354_0001375003578075-3581143 -chromatin-remodeling protein SPT16
CKM354_0001376003581597-3582944 +Mitochondrial carrier protein | domain-containing protein
CKM354_0001377003582965-3583490 -uncharacterized protein
CKM354_0001378003584636-3585988 -uncharacterized protein