CimmitisRS Coccidioides immitis RS

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, GG704911:7370949-7383205

MATPredictFungiDBSLA2 (flanking_conserved) GG704911:7370949-7374880 + identity 100.0SLA2CIMG_00407 (core_MAT) GG704911:7376659-7377555 - identity 100.0CIMG_00407MAT1-2-4 (core_MAT) GG704911:7376795-7376917 - identity 34.146MAT1-2-4MAT1-2-1 (core_MAT) GG704911:7378000-7379129 + identity 100.0MAT1-2-1APN2 (flanking_conserved) GG704911:7379861-7381917 - identity 100.0APN2COX13 (flanking_conserved) GG704911:7382537-7383205 + identity 100.0COX13CIMG_00411 SRB8 7361014-7366608 -: RNA polymerase II mediator complex component Srb8CIMG_00411 SRB8CIMG_00410 7367491-7370547 +: mitochondrial morphology maintaining protein MMM1 domain-containing proteinCIMG_00410CIMG_00409 7370753-7375220 +: cytoskeleton assembly control proteinCIMG_00409CIMG_00407 7376659-7377555 -: hypothetical proteinCIMG_00407CIMG_00406 7377854-7379544 +: HMG domain-containing proteinCIMG_00406CIMG_00405 7379688-7382013 -: exodeoxyribonuclease III (xth)CIMG_00405CIMG_00404 7382483-7383483 +: Cytochrome c oxidase subunit ViaCIMG_00404CIMG_10544 7383638-7385272 -: mannosyltransferase, putativeCIMG_10544CIMG_12876 7385710-7386446 -: hypothetical proteinCIMG_128767366 kb7368 kb7370 kb7372 kb7374 kb7376 kb7378 kb7380 kb7382 kb7384 kb7386 kb7388 kbGG704911
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved7370949-7374880 +annotatedCIMG_00409cytoskeleton assembly control proteinCIMG_00409 covers 100% of it on the same strand
CIMG_00407core_MAT7376659-7377555 -annotatedCIMG_00407hypothetical proteinCIMG_00407 covers 100% of it on the same strand
MAT1-2-4core_MAT7376795-7376917 -annotatedCIMG_00407hypothetical proteinCIMG_00407 covers 100% of it on the same strand
MAT1-2-1core_MAT7378000-7379129 +annotatedCIMG_00406HMG domain-containing proteinCIMG_00406 covers 100% of it on the same strand
APN2flanking_conserved7379861-7381917 -annotatedCIMG_00405exodeoxyribonuclease III (xth)CIMG_00405 covers 100% of it on the same strand
COX13flanking_conserved7382537-7383205 +annotatedCIMG_00404Cytochrome c oxidase subunit ViaCIMG_00404 covers 100% of it on the same strand