ChigginsianumIMI349063 Colletotrichum higginsianum IMI 349063

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, LTAN01000007:829775-846570

MATPredictFungiDBSLA2 (flanking_conserved) LTAN01000007:829775-833242 + identity 85.2SLA2MAT1-2-1 (core_MAT) LTAN01000007:841428-842285 + identity 50.0MAT1-2-1APN2 (flanking_conserved) LTAN01000007:842569-844574 - identity 81.8APN2COX13 (flanking_conserved) LTAN01000007:845703-846570 + identity 70.8COX13CH63R_09965 824856-826247 +: Pre-mRNA-splicing factor SLU7CH63R_09965CH63R_09966 826539-827330 -: 40S ribosomal protein S9CH63R_09966CH63R_09967 827702-828376 +: 60S ribosomal protein L21-ACH63R_09967CH63R_09968 829775-833242 +: SLA2 proteinCH63R_09968CH63R_09969 837966-839326 -: unspecified productCH63R_09969CH63R_09970 841428-842285 +: HMG box proteinCH63R_09970CH63R_09971 842569-844574 -: DNA lyaseCH63R_09971CH63R_09972 845703-846570 +: Cytochrome c oxidase subunit VIaCH63R_09972CH63R_09973 846870-849356 -: Anaphase-promoting complex proteinCH63R_09973CH63R_09974 850150-851051 -: Complex I intermediate-associated protein 30CH63R_09974828 kb832 kb836 kb840 kb844 kb848 kbLTAN01000007
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
SLA2flanking_conserved829775-833242 +annotatedCH63R_09968SLA2 proteinCH63R_09968 covers 100% of it on the same strand
MAT1-2-1core_MAT841428-842285 +annotatedCH63R_09970HMG box proteinCH63R_09970 covers 100% of it on the same strand
APN2flanking_conserved842569-844574 -annotatedCH63R_09971DNA lyaseCH63R_09971 covers 100% of it on the same strand
COX13flanking_conserved845703-846570 +annotatedCH63R_09972Cytochrome c oxidase subunit VIaCH63R_09972 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
CH63R_09969837966-839326 -unspecified product