CdeuterogattiiR265 Cryptococcus deuterogattii R265
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CP025767:153700-262784
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| FAO1 | flanking_conserved | 153700-155047 + | annotated | CNBG_5881 FAO1 | putative fatty alcohol oxidase in the mating-type locus | CNBG_5881 covers 100% of it on the same strand |
| SXI2 | core_MAT | 155546-155727 - | novel | — | no FungiDB gene overlaps this MATPredict gene | |
| SXI1 | core_MAT | 156583-157936 + | annotated | CNBG_5880 SXI1alpha | alpha cell-type homeodomain transcription factor | CNBG_5880 covers 100% of it on the same strand |
| STE3 | core_MAT | 222873-224188 + | annotated | CNBG_5865 STE3alpha | a-factor pheromone receptor | CNBG_5865 covers 100% of it on the same strand |
| MFalpha | core_MAT | 228838-228954 - | annotated | CNBG_10121 | unspecified product | CNBG_10121 covers 100% of it on the same strand |
| RPL39 | core_MAT | 247460-247959 - | annotated | CNBG_5859 RPL39alpha | large subunit ribosomal protein L39 | CNBG_5859 covers 100% of it on the same strand |
| PAN6 | flanking_conserved | 261090-262784 + | annotated | CNBG_5855 PAN6 | pantoate-beta-alanine ligase | CNBG_5855 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| CNBG_5879 RPL22alpha | 158578-159858 + | large subunit ribosomal protein L22e |
| CNBG_5878 | 159862-160689 - | vacuolar protein sorting-associated protein 26B-A |
| CNBG_10076 | 160819-161338 - | Vacuolar protein sorting-associated protein 26 | domain-containing protein |
| CNBG_5877 RUM1alpha | 161753-168524 + | phd transcription factor |
| CNBG_5876 BSP1 | 168712-172217 + | protein of unknown function, encoded on mat locus |
| CNBG_5875 | 172230-175772 + | GEF1 protein |
| CNBG_5874 SPO14alpha | 176173-183203 - | phospholipase D1 |
| CNBG_5873 CAP1alpha | 183601-186861 - | O-glucosyltransferase |
| CNBG_5872 CID1alpha | 189967-193344 + | cid1-family polyA polymerase |
| CNBG_5871 LPD1alpha | 193566-195753 + | putative dihydrolipoyl dehydrogenase |
| CNBG_5870 BSP2 | 195684-198534 - | armadillo/beta-catenin repeat protein, encoded on mat locus |
| CNBG_5869 RPO41alpha | 198579-203176 + | DNA-directed mRNA polymerase, mitochondrial |
| CNBG_9621 | 203436-207821 - | STE/STE11 protein kinase |
| CNBG_5868 MYO2alpha | 208111-214947 + | myosin class v heavy chain |
| CNBG_5867 STE20alpha | 213851-217813 - | ste/ste20/paka protein kinase |
| CNBG_5866 ETF1alpha | 220125-221705 - | electron transfer flavoprotein alpha subunit |
| CNBG_5864 IKS1 | 224851-227955 + | serine/threonine-protein kinase |
| CNBG_10122 | 229191-229853 + | unspecified product |
| CNBG_5863 | 230812-233635 + | PRT1 protein |
| CNBG_5862 | 233663-237684 - | BAH domain | PHD-finger | PHD-zinc-finger like domain | domain-containing protein |
| CNBG_5861 MFalpha3 | 239383-240098 - | mating-type pheromone alpha |
| CNBG_10123 | 240169-240775 + | unspecified product |
| CNBG_5860 BSP3 | 242574-246873 + | btp/pz domain protein |
| CNBG_5858 STE12alpha | 249993-254052 - | ste-like transcription factor |
| CNBG_5857 MAT3 | 254304-257265 + | mat3 pheromone repeat protein |
| CNBG_9620 | 257098-257647 - | unspecified product |
| CNBG_5856 NOG2 | 257798-260868 + | putative nucleolar gtp-binding protein |