Ccf.gattiiMF34 Cryptococcus cf. gattii MF34
Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.
core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict
Basidiomycota_MAT_0: alpha Basidiomycota:MAT, confidence high, CM018868:59680-262446
| MATPredict gene | Role | Coordinates | Verdict | FungiDB gene | FungiDB product | Why |
|---|---|---|---|---|---|---|
| FAO1 | flanking_conserved | 146033-147380 + | annotated | D1P53_003263 | non-haem dioxygenase in morphine synthesis N-terminal | 2OG-Fe(II) oxygenase superfamily | domain-containing protein | D1P53_003263 covers 100% of it on the same strand |
| SXI2 | core_MAT | 147892-148082 - | novel | — | no FungiDB gene overlaps this MATPredict gene | |
| SXI1 | core_MAT | 148521-151835 + | annotated | D1P53_003264 | Homeobox KN domain | Ribosomal L22e protein family | domain-containing protein | D1P53_003264 covers 100% of it on the same strand |
| STE3 | core_MAT | 224262-228685 + | annotated | D1P53_003280 | Protein kinase domain | Pheromone A receptor | domain-containing protein | D1P53_003280 covers 100% of it on the same strand |
| MFalpha | core_MAT | 229842-229955 - | novel | — | no FungiDB gene overlaps this MATPredict gene | |
| RPL39 | core_MAT | 248437-254192 - | annotated | D1P53_003284 | 60S ribosomal protein L39 | D1P53_003284 covers 100% of it on the same strand |
| PAN6 | flanking_conserved | 260700-262446 + | annotated | D1P53_003287 | pantoate-beta-alanine ligase | D1P53_003287 covers 100% of it on the same strand |
FungiDB genes inside the locus span that MATPredict did not model:
| FungiDB gene | Coordinates | Product |
|---|---|---|
| D1P53_003237 | 59558-63409 + | Peroxisomal ATPase PEX1 |
| D1P53_003238 | 64020-66912 - | elongation factor 2 |
| D1P53_003239 | 69433-69515 - | tRNA-Trp |
| D1P53_003240 | 69998-71181 - | Phospholipid methyltransferase | domain-containing protein |
| D1P53_003241 | 71763-74000 + | RNA helicase |
| D1P53_003242 | 74813-77142 + | PH domain | domain-containing protein |
| D1P53_003243 | 77486-79239 - | Oxidoreductase family, C-terminal alpha/beta domain | Oxidoreductase family, NAD-binding Rossmann fold | domain-containing protein |
| D1P53_003244 | 81632-83976 + | Beta-glucan synthesis-associated protein SKN1/KRE6/Sbg1 | domain-containing protein |
| D1P53_003245 | 84252-87437 - | dolichyl-phosphate-mannose-protein mannosyltransferase |
| D1P53_003246 | 92103-94269 + | Beta-glucan synthesis-associated protein SKN1/KRE6/Sbg1 | domain-containing protein |
| D1P53_003247 | 95092-97836 - | histidinol dehydrogenase |
| D1P53_003248 | 98192-100000 - | squalene monooxygenase |
| D1P53_003249 | 101567-104432 + | Transmembrane amino acid transporter protein | domain-containing protein |
| D1P53_003250 | 105675-106865 + | Protein of unknown function (DUF3760) | domain-containing protein |
| D1P53_003251 | 108434-110454 + | YL1 nuclear protein | YL1 nuclear protein C-terminal domain | domain-containing protein |
| D1P53_003252 | 111006-112777 - | Eukaryotic integral membrane protein (DUF1751) | domain-containing protein |
| D1P53_003253 | 112956-115709 + | LisH | WD domain, G-beta repeat | domain-containing protein |
| D1P53_003254 | 116571-117308 + | unspecified product |
| D1P53_003255 | 117547-120248 - | unspecified product |
| D1P53_003256 | 121094-123438 - | ferric-chelate reductase (NADPH) |
| D1P53_003257 | 124785-125639 + | unspecified product |
| D1P53_003258 | 125889-132158 - | Chromatin-remodeling ATPase INO80 |
| D1P53_003259 | 134523-137294 - | unspecified product |
| D1P53_003260 | 137675-140569 + | Fungal specific transcription factor domain | domain-containing protein |
| D1P53_003261 | 141300-143467 - | Permease family | domain-containing protein |
| D1P53_003262 | 144379-145456 - | Cytidine and deoxycytidylate deaminase zinc-binding region | domain-containing protein |
| D1P53_003265 | 153263-159236 + | [histone H3]-trimethyl-L-lysine4 demethylase |
| D1P53_003266 | 160130-162515 + | unspecified product |
| D1P53_003267 | 163772-166944 + | RhoGEF domain | domain-containing protein |
| D1P53_003268 | 167440-174038 - | Phospholipase D Active site motif | domain-containing protein |
| D1P53_003269 | 175600-177843 - | Glycosyl transferase family 90 | domain-containing protein |
| D1P53_003270 | 179664-182614 + | Cid1 family poly A polymerase | Poly(A) RNA polymerase, mitochondrial-like, central palm domain | domain-containing protein |
| D1P53_003271 | 183075-185142 + | dihydrolipoyl dehydrogenase |
| D1P53_003272 | 185271-187968 - | unspecified product |
| D1P53_003273 | 188224-192597 + | DNA-directed RNA polymerase |
| D1P53_003274 | 192993-196954 - | Protein kinase domain | SAM domain (Sterile alpha motif) | Ras-binding domain of Byr2 | domain-containing protein |
| D1P53_003275 | 197951-203782 + | DIL domain | Myosin head (motor domain) | domain-containing protein |
| D1P53_003276 | 204336-206743 - | non-specific serine/threonine protein kinase |
| D1P53_003277 | 207601-212846 - | Glycosyl transferase family group 2 | domain-containing protein |
| D1P53_003278 | 213128-216310 + | Glycosyl transferase family group 2 | domain-containing protein |
| D1P53_003279 | 221132-222557 - | Electron transfer flavoprotein domain | Electron transfer flavoprotein FAD-binding domain | domain-containing protein |
| D1P53_003281 | 234020-236777 + | unspecified product |
| D1P53_003282 | 236918-239577 - | eukaryotic translation initiation factor 3 subunit B |
| D1P53_003283 | 244581-246711 + | BTB/POZ domain | domain-containing protein |
| D1P53_003285 | 255865-256944 + | unspecified product |
| D1P53_003286 | 257596-260423 + | nucleolar GTP-binding protein 2 |