CbeticolaCb09-40 Cercospora beticola Cb09-40

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence medium, NC_088936:1430674-1451945

MATPredictFungiDBMAT1-1-1 (core_MAT) NC_088936:1430674-1431837 + identity 55.3MAT1-1-1COX13 (flanking_conserved) NC_088936:1451099-1451945 + identity 67.7COX13RHO25_002567 1428193-1429348 -: uncharacterized proteinRHO25_002567RHO25_002568 1430674-1431837 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinRHO25_002568RHO25_002569 1432219-1432920 +: uncharacterized proteinRHO25_002569RHO25_002570 1433631-1436918 +: uncharacterized proteinRHO25_002570RHO25_002571 1437053-1438694 -: Alcohol dehydrogenase GroES-like domain | Zinc-binding dehydrogenase | domain-containing proteinRHO25_002571RHO25_002572 1439316-1440929 +: Cytochrome P450 | domain-containing proteinRHO25_002572RHO25_002573 1441190-1442470 -: Haloacid dehalogenase-like hydrolase | HAD-hyrolase-like | domain-containing proteinRHO25_002573RHO25_002574 SPT16 1442778-1445846 -: FACT complex subunit spt16RHO25_002574 SPT16RHO25_002575 1446372-1447650 +: Mitochondrial carrier protein | domain-containing proteinRHO25_002575RHO25_002576 1447671-1448619 -: uncharacterized proteinRHO25_002576RHO25_002577 1449344-1450696 -: uncharacterized proteinRHO25_002577RHO25_002578 1451099-1451945 +: Cytochrome c oxidase subunit VIa | domain-containing proteinRHO25_002578RHO25_002579 1452630-1455538 -: MIR domain | Dolichyl-phosphate-mannose-protein mannosyltransferase | C-terminal four TMM region of protein-O-mannosyltransferase | domain-containing proteinRHO25_002579RHO25_002580 1456143-1457708 +: Surp module | Pre-mRNA splicing factor PRP21 like protein | domain-containing proteinRHO25_0025801428 kb1432 kb1436 kb1440 kb1444 kb1448 kb1452 kb1456 kbNC_088936
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT1430674-1431837 +annotatedRHO25_002568Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinRHO25_002568 covers 100% of it on the same strand
COX13flanking_conserved1451099-1451945 +annotatedRHO25_002578Cytochrome c oxidase subunit VIa | domain-containing proteinRHO25_002578 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
RHO25_0025691432219-1432920 +uncharacterized protein
RHO25_0025701433631-1436918 +uncharacterized protein
RHO25_0025711437053-1438694 -Alcohol dehydrogenase GroES-like domain | Zinc-binding dehydrogenase | domain-containing protein
RHO25_0025721439316-1440929 +Cytochrome P450 | domain-containing protein
RHO25_0025731441190-1442470 -Haloacid dehalogenase-like hydrolase | HAD-hyrolase-like | domain-containing protein
RHO25_002574 SPT161442778-1445846 -FACT complex subunit spt16
RHO25_0025751446372-1447650 +Mitochondrial carrier protein | domain-containing protein
RHO25_0025761447671-1448619 -uncharacterized protein
RHO25_0025771449344-1450696 -uncharacterized protein