MATPredict · mating-type report

CaurisB11243

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:34 UTC by MATPredict 0.8.1

Result

Mating type

Ahigh confidence

Called loci 1

A MTL family · Ascomycota

high confidence
Gene order of the A locus on PYGM01000086A locus: genes from left to right on PYGM01000086, 8,313 to 16,044: PAP1 (variable flank, minus strand); OBP1 (variable flank, plus strand); PIK1 (variable flank, plus strand); MTLA2 (core MAT gene, plus strand); MTLA1 (core MAT gene, plus strand).8 kb10 kb12 kb14 kb16 kb← 7.9 kb more to contig endcalled locusPAP1: variable flank, 8,313–9,947 (-), identity 100.0%, search hit onlyPAP1OBP1: variable flank, 10,174–11,463 (+), identity 100.0%, search hit onlyOBP1PIK1: variable flank, 12,132–14,759 (+), identity 100.0%, search hit onlyPIK1MTLA2: core MAT gene, 14,845–15,461 (+), identity 100.0%, search hit onlyMTLA2MTLA1: core MAT gene, 15,745–16,044 (+), identity 100.0%, search hit onlyMTLA1
Gene order on PYGM01000086. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on PYGM01000086, 7,927 to 16,430CJJ07_004259 6,789-8,270 (+): Insulinase (Peptidase family M16) | Peptidase M16 inactive domain | domain-containing proteinCJJ07_004259CJJ07_004260 8,313-9,947 (-): Poly(A) polymerase PAPaCJJ07_004260CJJ07_004261 10,174-11,463 (+): Oxysterol-binding protein | domain-containing proteinCJJ07_004261CJJ07_004262 12,132-14,759 (+): Yeast phosphatidylinositol-4-OH kinase Pik1 | Phosphatidylinositol 3- and 4-kinase | domain-containing proteinCJJ07_004262CJJ07_005606 14,845-15,461 (+): mating_type_MTLa2CJJ07_005606CJJ07_005605 15,745-16,044 (+): mating_type_MTLa1CJJ07_005605CJJ07_004263 16,108-18,495 (-): unspecified productCJJ07_004263
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • variable flank
  • search hit only
Location
PYGM01000086:8,313–16,044 · 7.7 kb
Cross-lineage class
MAT1-2
Own genes
PYGM01000086:8,313–16,044 · 7.7 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
5 of 5 gene hits
Nearest contig end
8.3 kb
Region (samtools)
PYGM01000086:8313-16044
Idiomorph scores
  • A 303.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
PAP1variable flankhit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,084 bits8,313–9,947 -–498019_b11243_MTL_ACJJ07_004260
OBP1variable flankhit onlyDIAMOND, proteome100.0cov 100.0%7.0e-322860 bits10,174–11,463 +–498019_b11205_MTL_ACJJ07_004261
PIK1variable flankhit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,650 bits12,132–14,759 +–498019_b11243_MTL_ACJJ07_004262
MTLA2core MAThit onlyDIAMOND, proteome100.0cov 100.0%1.2e-110303 bits14,845–15,461 +–498019_b11243_MTL_ACJJ07_005606
MTLA1core MAThit onlyDIAMOND, proteome100.0cov 54.8%1.3e-62180 bits15,745–16,044 +–498019_b11243_MTL_ACJJ07_005605

Withheld candidate loci 53

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: fewer than 2 genes could be modelled (52); too few of the family's genes found (1).

Show the 53 withheld loci

Withheld loci (53)

familylocationidiomorph genesmodelledreason
MTLPYGM01000027:85,039–111,068AMTLA1, PIK11fewer than 2 genes could be modelled
MTLPYGM01000063:9,078–27,831AMTLA1, PIK11fewer than 2 genes could be modelled
MTLPYGM01000017:149,809–152,374alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000041:17,115–17,231alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000031:66,037–66,369AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000003:144,960–145,079AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000006:21,622–21,741AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000002:117,787–117,990AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000002:237,980–238,087AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000026:103,340–106,305AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLPYGM01000013:149,083–152,678AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLPYGM01000014:52,816–53,055AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000014:164,077–164,244AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000015:128,312–128,461AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000089:40,364–40,555AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000135:26,701–26,796AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000201:4,453–4,587AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000012:173,284–173,463AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000004:204,064–204,195alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000057:27,062–27,232alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000140:3,708–3,872alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000193:3,937–4,080alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000048:44,746–44,895alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000065:36,696–51,774alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000005:169,953–170,165alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000081:16,763–16,978AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000081:47,878–48,042alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000147:4,927–5,070alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000110:33,487–33,645AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000021:29,381–29,530AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000021:74,680–74,862AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000022:54,485–72,120AMTLA1, MTLA20fewer than 2 genes could be modelled
MTLPYGM01000034:86,768–86,968alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000139:24,866–24,967alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000044:43,846–44,022alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000028:40,198–40,314AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000028:98,344–98,457AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000009:112,226–112,348AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000162:12,234–12,341AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000222:963–1,055AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000209:1,790–1,930AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000157:12,330–12,461AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000051:54,481–54,609AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000090:16,871–19,961AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000119:18,270–18,395AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000056:44,905–45,018AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000117:20,707–20,928AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000033:37,617–37,715alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000030:72,749–72,847alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000102:28,328–28,432alphaMTLalpha10fewer than 2 genes could be modelled
MTLPYGM01000019:89,966–90,148AMTLA20fewer than 2 genes could be modelled
MTLPYGM01000076:20,170–20,406AMTLA10fewer than 2 genes could be modelled
MTLPYGM01000070:55,614–56,873undeterminedOBP11too few of the family's genes found

Provenance

Genome file
CaurisB11243.genome.fasta
Assembly
238 contigs · 12.4 Mb · N50 86.7 kb
Genome SHA-256
832022add5c8770723594d0aefe440a7dc451e37c2fea6ef647b73d490c1594f
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 27319, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 12, 'genetic_code_from': 'family taxid 27319', 'routed_by': 'family taxid 27319 (lineage)'}, genetic_code=12, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, supported_min_bitscore=33.0
Run started
2026-11-07T02:33:50Z
Run time
21 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits