BdermatitidisER-3 Blastomyces dermatitidis ER-3

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, EQ999978:1559343-1588314

MATPredictFungiDBAPN2 (flanking_conserved) EQ999978:1559343-1561636 - identity 79.5APN2COX13 (flanking_conserved) EQ999978:1561989-1562879 + identity 78.8COX13MAT1-1-4 (core_MAT) EQ999978:1565687-1566388 + identity 40.2MAT1-1-4MAT1-2-1 (core_MAT) EQ999978:1567558-1568699 - identity 52.4MAT1-2-1CIMG_00407 (core_MAT) EQ999978:1569538-1570145 + identity 40.62CIMG_00407MAT1-2-4 (core_MAT) EQ999978:1569547-1570029 + identity 25.466MAT1-2-4SLA2 (flanking_conserved) EQ999978:1584018-1588314 - identity 89.4SLA2BDCG_05967 1550911-1558304 -: RNA polymerase II mediator complex component Srb8BDCG_05967BDCG_05968 1559343-1561636 -: AP endonuclease 2BDCG_05968BDCG_05969 1561989-1562879 +: cytochrome c oxidase subunit 6aBDCG_05969BDCG_05970 1563296-1564562 +: unspecified productBDCG_05970BDCG_05971 1565548-1566754 +: unspecified productBDCG_05971BDCG_05972 1566851-1571144 -: HMG (high mobility group) box | domain-containing proteinBDCG_05972BDCG_05973 1569039-1571141 +: hypothetical protein, variantBDCG_05973BDCG_05975 1582358-1588616 -: I/LWEQ domain | ANTH domain | domain-containing proteinBDCG_05975BDCG_05976 1588837-1592505 -: PH domain-containing proteinBDCG_05976BDCG_05978 1592636-1597916 +: LYC1 GNAT-like C-terminal domain | Acetyltransferase (GNAT) family | domain-containing proteinBDCG_05978BDCG_05977 1592658-1596296 -: ankyrin repeat proteinBDCG_059771556 kb1560 kb1564 kb1568 kb1572 kb1576 kb1580 kb1584 kb1588 kb1592 kbEQ999978
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
APN2flanking_conserved1559343-1561636 -annotatedBDCG_05968AP endonuclease 2BDCG_05968 covers 100% of it on the same strand
COX13flanking_conserved1561989-1562879 +annotatedBDCG_05969cytochrome c oxidase subunit 6aBDCG_05969 covers 100% of it on the same strand
MAT1-1-4core_MAT1565687-1566388 +annotatedBDCG_05971unspecified productBDCG_05971 covers 100% of it on the same strand
MAT1-2-1core_MAT1567558-1568699 -annotatedBDCG_05972HMG (high mobility group) box | domain-containing proteinBDCG_05972 covers 100% of it on the same strand
CIMG_00407core_MAT1569538-1570145 +partialBDCG_05972HMG (high mobility group) box | domain-containing proteinBDCG_05972 overlaps 100% but on the opposite strand
MAT1-2-4core_MAT1569547-1570029 +partialBDCG_05972HMG (high mobility group) box | domain-containing proteinBDCG_05972 overlaps 100% but on the opposite strand
SLA2flanking_conserved1584018-1588314 -annotatedBDCG_05975I/LWEQ domain | ANTH domain | domain-containing proteinBDCG_05975 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
BDCG_059701563296-1564562 +unspecified product