BcinereaB05-10 Botrytis cinerea B05.10

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, bcin_chr_1:808494-821433

MATPredictFungiDBCOX13 (flanking_conserved) bcin_chr_1:808494-809195 - identity 63.6COX13APN2 (flanking_conserved) bcin_chr_1:809663-811851 + identity 84.1APN2MAT1-2-1 (core_MAT) bcin_chr_1:813026-813205 - identity 70.0MAT1-2-1MAT1-1-5 (core_MAT) bcin_chr_1:813478-814778 + identity 100.0MAT1-1-5MAT1-1-1 (core_MAT) bcin_chr_1:815137-816297 + identity 100.0MAT1-1-1SLA2 (flanking_conserved) bcin_chr_1:817947-821433 - identity 91.1SLA2Bcin01g02090 Bcade1 802711-804097 -: phosphoribosylaminoimidazolesuccinocarboxamide synthaseBcin01g02090 Bcade1Bcin01g02100 804256-805522 +: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinBcin01g02100Bcin01g02110 805657-808360 +: Anaphase-promoting complex subunit 5 | domain-containing proteinBcin01g02110Bcin01g02120 Bccox13 808363-809280 -: Cytochrome c oxidase subunit VIa | domain-containing proteinBcin01g02120 Bccox13Bcin01g02130 Bcapn2 809432-812099 +: DNA-(apurinic or apyrimidinic site) endonuclease 2Bcin01g02130 Bcapn2Bcin01g02140 813342-814869 +: unspecified productBcin01g02140Bcin01g02150 814948-816426 +: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinBcin01g02150Bcin01g02160 Bcsla2 817328-821589 -: I/LWEQ domain | ANTH domain | domain-containing proteinBcin01g02160 Bcsla2Bcin01g02170 Bcnvj2 821725-825423 -: Pleckstrin homology domain | Maintenance of mitochondrial morphology protein 1 | domain-containing proteinBcin01g02170 Bcnvj2Bcin01g02180 Bcrev3 825733-831397 -: DNA polymerase zeta catalytic subunit, DNA-directed DNA polymeraseBcin01g02180 Bcrev3804 kb806 kb808 kb810 kb812 kb814 kb816 kb818 kb820 kb822 kb824 kb826 kbbcin_chr_1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved808494-809195 -annotatedBcin01g02120 Bccox13Cytochrome c oxidase subunit VIa | domain-containing proteinBcin01g02120 covers 100% of it on the same strand
APN2flanking_conserved809663-811851 +annotatedBcin01g02130 Bcapn2DNA-(apurinic or apyrimidinic site) endonuclease 2Bcin01g02130 covers 100% of it on the same strand
MAT1-2-1core_MAT813026-813205 -novel—no FungiDB gene overlaps this MATPredict gene
MAT1-1-5core_MAT813478-814778 +annotatedBcin01g02140unspecified productBcin01g02140 covers 100% of it on the same strand
MAT1-1-1core_MAT815137-816297 +annotatedBcin01g02150Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinBcin01g02150 covers 100% of it on the same strand
SLA2flanking_conserved817947-821433 -annotatedBcin01g02160 Bcsla2I/LWEQ domain | ANTH domain | domain-containing proteinBcin01g02160 covers 100% of it on the same strand