AsydowiiCBS593.65 Aspergillus sydowii CBS 593.65

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence medium, KV878584:2682862-2725648

MATPredictFungiDBMAT1-2-10 (core_MAT) KV878584:2682862-2683041 - identity 29.032MAT1-2-10COX13 (flanking_conserved) KV878584:2706376-2709436 - identity 88.2COX13APN2 (flanking_conserved) KV878584:2709746-2711878 + identity 90.9APN2MAT1-2-1 (core_MAT) KV878584:2716850-2717911 - identity 71.4MAT1-2-1MAT1-2-4 (core_MAT) KV878584:2718441-2719330 + identity 46.2MAT1-2-4CIMG_00407 (core_MAT) KV878584:2719045-2719155 + identity 51.351CIMG_00407SLA2 (flanking_conserved) KV878584:2721754-2725648 - identity 90.8SLA2ASPSYDRAFT_56658 2677426-2678395 -: N-glycosylation protein | domain-containing proteinASPSYDRAFT_56658ASPSYDRAFT_87871 2679057-2680132 +: hypothetical proteinASPSYDRAFT_87871ASPSYDRAFT_147033 rgd1 2680716-2683179 -: putative Rho GTPase activator (Rgd1)ASPSYDRAFT_147033 rgd1ASPSYDRAFT_147413 2683936-2686395 +: Fungal specific transcription factor domain | domain-containing proteinASPSYDRAFT_147413ASPSYDRAFT_822203 2687526-2688572 +: Ras family | domain-containing proteinASPSYDRAFT_822203ASPSYDRAFT_43270 2689211-2690370 -: Translation initiation factor SUI1 | domain-containing proteinASPSYDRAFT_43270ASPSYDRAFT_824081 2692318-2693744 +: hypothetical proteinASPSYDRAFT_824081ASPSYDRAFT_56663 2694158-2699389 +: SRB8 ARM-like domain | Transcription mediator complex subunit Med12 | domain-containing proteinASPSYDRAFT_56663ASPSYDRAFT_822038 2699992-2700976 -: RNA recognition motif | domain-containing proteinASPSYDRAFT_822038ASPSYDRAFT_822037 2700978-2701487 +: hypothetical proteinASPSYDRAFT_822037ASPSYDRAFT_87877 2701675-2702847 +: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinASPSYDRAFT_87877ASPSYDRAFT_147430 2702970-2704054 -: phosphoribosylaminoimidazolesuccinocarboxamide synthaseASPSYDRAFT_147430ASPSYDRAFT_824362 2704159-2706184 -: Cryptococcal mannosyltransferase 1 | domain-containing proteinASPSYDRAFT_824362ASPSYDRAFT_146414 2706376-2709436 -: Cytochrome c oxidase subunit VIa | FAD binding domain | domain-containing proteinASPSYDRAFT_146414ASPSYDRAFT_87882 2709746-2711878 +: DNA-(apurinic or apyrimidinic site) endonuclease 2ASPSYDRAFT_87882ASPSYDRAFT_56669 2712942-2715553 -: Anaphase-promoting complex subunit 5 | domain-containing proteinASPSYDRAFT_56669ASPSYDRAFT_87884 2716850-2717911 -: HMG (high mobility group) box | domain-containing proteinASPSYDRAFT_87884ASPSYDRAFT_824807 2718309-2719631 +: hypothetical proteinASPSYDRAFT_824807ASPSYDRAFT_43291 2721361-2725887 -: I/LWEQ domain | ANTH domain | domain-containing proteinASPSYDRAFT_43291ASPSYDRAFT_87887 2726400-2729237 -: Pleckstrin homology domain | domain-containing proteinASPSYDRAFT_87887ASPSYDRAFT_29832 2730270-2733984 -: DASH complex subunit SPC34ASPSYDRAFT_298322680 kb2688 kb2696 kb2704 kb2712 kb2720 kb2728 kbKV878584
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-2-10core_MAT2682862-2683041 -annotatedASPSYDRAFT_147033 rgd1putative Rho GTPase activator (Rgd1)ASPSYDRAFT_147033 covers 100% of it on the same strand
COX13flanking_conserved2706376-2709436 -annotatedASPSYDRAFT_146414Cytochrome c oxidase subunit VIa | FAD binding domain | domain-containing proteinASPSYDRAFT_146414 covers 100% of it on the same strand
APN2flanking_conserved2709746-2711878 +annotatedASPSYDRAFT_87882DNA-(apurinic or apyrimidinic site) endonuclease 2ASPSYDRAFT_87882 covers 100% of it on the same strand
MAT1-2-1core_MAT2716850-2717911 -annotatedASPSYDRAFT_87884HMG (high mobility group) box | domain-containing proteinASPSYDRAFT_87884 covers 100% of it on the same strand
MAT1-2-4core_MAT2718441-2719330 +annotatedASPSYDRAFT_824807hypothetical proteinASPSYDRAFT_824807 covers 100% of it on the same strand
CIMG_00407core_MAT2719045-2719155 +annotatedASPSYDRAFT_824807hypothetical proteinASPSYDRAFT_824807 covers 100% of it on the same strand
SLA2flanking_conserved2721754-2725648 -annotatedASPSYDRAFT_43291I/LWEQ domain | ANTH domain | domain-containing proteinASPSYDRAFT_43291 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
ASPSYDRAFT_1474132683936-2686395 +Fungal specific transcription factor domain | domain-containing protein
ASPSYDRAFT_8222032687526-2688572 +Ras family | domain-containing protein
ASPSYDRAFT_432702689211-2690370 -Translation initiation factor SUI1 | domain-containing protein
ASPSYDRAFT_8240812692318-2693744 +hypothetical protein
ASPSYDRAFT_566632694158-2699389 +SRB8 ARM-like domain | Transcription mediator complex subunit Med12 | domain-containing protein
ASPSYDRAFT_8220382699992-2700976 -RNA recognition motif | domain-containing protein
ASPSYDRAFT_8220372700978-2701487 +hypothetical protein
ASPSYDRAFT_878772701675-2702847 +Complex I intermediate-associated protein 30 (CIA30) | domain-containing protein
ASPSYDRAFT_1474302702970-2704054 -phosphoribosylaminoimidazolesuccinocarboxamide synthase
ASPSYDRAFT_8243622704159-2706184 -Cryptococcal mannosyltransferase 1 | domain-containing protein
ASPSYDRAFT_566692712942-2715553 -Anaphase-promoting complex subunit 5 | domain-containing protein