MATPredict · mating-type report

AparasiticusCBS117618

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:30 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on ML734957MAT1-1 locus: genes from left to right on ML734957, 390,444 to 402,142: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).390 kb392 kb394 kb396 kb398 kb400 kb402 kb66.7 kb more to contig end →called locusCOX13: conserved flank, 390,444–391,202 (-), identity 83.6%, search hit onlyCOX13APN2: conserved flank, 391,558–393,713 (+), identity 84.1%, search hit onlyAPN2MAT1-1-1: core MAT gene, 395,540–396,707 (+), identity 52.7%, search hit onlyMAT1-1-1SLA2: conserved flank, 398,321–402,142 (-), identity 90.3%, search hit onlySLA2
Gene order on ML734957. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on ML734957, 389,861 to 402,726BDV34DRAFT_69459 387,378-390,576 (+): anaphase-promoting complex subunit 5-domain-containing proteinBDV34DRAFT_69459BDV34DRAFT_223666 390,444-391,202 (-): cytochrome c oxidase, subunit VIaBDV34DRAFT_223666BDV34DRAFT_192254 391,274-393,864 (+): Endonuclease/exonuclease/phosphataseBDV34DRAFT_192254BDV34DRAFT_223668 395,540-396,707 (+): mating-type protein MAT alpha 1-domain-containing proteinBDV34DRAFT_223668BDV34DRAFT_192260 398,043-402,424 (-): ANTH domain-containing proteinBDV34DRAFT_192260BDV34DRAFT_192261 402,607-405,978 (-): Pleckstrin homology domain | domain-containing proteinBDV34DRAFT_192261
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
ML734957:390,444–402,142 · 11.7 kb
Own genes
ML734957:390,444–402,142 · 11.7 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 4 gene hits
Nearest contig end
67.3 kb
Region (samtools)
ML734957:390444-402142
Idiomorph scores
  • MAT1-1 365.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
COX13conserved flankhit onlyDIAMOND, proteome83.6cov 100.0%1.2e-81229 bits390,444–391,202 -–746128_af293_MAT_MAT1-2BDV34DRAFT_69459 (opposite strand)
BDV34DRAFT_223666
APN2conserved flankhit onlyDIAMOND, proteome84.1cov 36.7%5.9e-317866 bits391,558–393,713 +–2903220_liq80xsp_MAT_combinedBDV34DRAFT_192254
MAT1-1-1core MAThit onlyDIAMOND, proteome52.7cov 100.0%4.5e-128365 bits395,540–396,707 +–746128_a1163_MAT_MAT1-1BDV34DRAFT_223668
SLA2conserved flankhit onlyDIAMOND, proteome90.3cov 88.7%< 1e-1801,637 bits398,321–402,142 -–746128_a1163_MAT_MAT1-1BDV34DRAFT_192260

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATML734941:140,756–142,359MAT1-2MAT1-2-11too few of the family's genes found
MATML734977:119,703–121,914MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
AparasiticusCBS117618.genome.fasta
Assembly
270 contigs · 38.4 Mb · N50 354.7 kb
Genome SHA-256
5d0b94f9870816cfa181f2afc8bea3edd5ab32fe8c38d8b033ea7c68c85005ff
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:29:19Z
Run time
74 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits