MATPredict · mating-type report

AochraceoroseusIBT24754

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:27 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on MSFN02000003MAT1-1 locus: genes from left to right on MSFN02000003, 2,028,215 to 2,036,654: MAT1-2-1 (core MAT gene, minus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).2,028 kb2,030 kb2,032 kb2,034 kb2,036 kb798.8 kb more to contig end →called locusMAT1-2-1: core MAT gene, 2,028,215–2,028,481 (-), identity 37.08%, the two modelling tools disagreeMAT1-2-1MAT1-1-1: core MAT gene, 2,029,273–2,030,409 (+), identity 56.6%, search hit onlyMAT1-1-1SLA2: conserved flank, 2,032,756–2,036,654 (-), identity 88.8%, search hit onlySLA2
Gene order on MSFN02000003. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on MSFN02000003, 2,027,794 to 2,037,075P175DRAFT_0477739 2,029,096-2,030,409 (+): Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinP175DRAFT_0477739P175DRAFT_0531509 2,031,101-2,031,832 (+): hypothetical proteinP175DRAFT_0531509P175DRAFT_0477742 2,032,756-2,036,888 (-): ANTH domain | I/LWEQ domain | domain-containing proteinP175DRAFT_0477742
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • tools disagree
  • alternate model
  • search hit only
  • MAT1-2-1 is a weak hit to the other idiomorph's gene and was not counted against the call.
Location
MSFN02000003:2,028,215–2,036,654 · 8.4 kb
Own genes
MSFN02000003:2,028,215–2,036,654 · 8.4 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
3 of 3 gene hits
Nearest contig end
799.2 kb
Region (samtools)
MSFN02000003:2028215-2036654
Idiomorph scores
  • MAT1-1 387.0
  • MAT1-2 64.3

Margin over the next idiomorph: 322.7

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MAT1-2-1core MATother idiomorph, not countedmodels differexonerateminiprot: 2,028,212–2,028,505, 37.1%37.1cov 28.0%3.2e-1164 bits2,028,215–2,028,481 -1162425_fgsc-a4_MAT_combinednone
MAT1-1-1core MAThit onlyDIAMOND, proteome56.6cov 100.0%5.7e-137387 bits2,029,273–2,030,409 +–162425_fgsc-a4_MAT_combinedP175DRAFT_0477739
SLA2conserved flankhit onlyDIAMOND, proteome88.8cov 100.0%< 1e-1801,557 bits2,032,756–2,036,654 -–107463_unknown-1_MAT_MAT1-2P175DRAFT_0477742
APN2expected, not found–
COX13expected, not found–

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATMSFN02000001:1,851,458–1,879,761MAT1-2MAT1-1-1, MAT1-2-11too few of the family's genes found
MATMSFN02000003:1,974,288–1,977,518undeterminedAPN2, COX132too few of the family's genes found

Provenance

Genome file
AochraceoroseusIBT24754.genome.fasta
Assembly
34 contigs · 27.7 Mb · N50 2.5 Mb
Genome SHA-256
11df2fbfd01b0083fc8df57fdd44b4a7031a4fbbe8da7e5bea69a64de1b4c3d2
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': ['identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:26:46Z
Run time
66 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits