AnigerN402ATCC64974 Aspergillus niger strain N402 (ATCC64974)

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-1 Ascomycota:MAT, confidence high, OGUI01000016.1:2517304-2548889

MATPredictFungiDBMAT1-1-1 (core_MAT) OGUI01000016.1:2517304-2518461 - identity 50.4MAT1-1-1APN2 (flanking_conserved) OGUI01000016.1:2520742-2522857 - identity 90.9APN2COX13 (flanking_conserved) OGUI01000016.1:2523413-2524128 + identity 77.3COX13MAT1-1-3 (core_MAT) OGUI01000016.1:2531902-2531994 - identity 41.935MAT1-1-3SLA2 (flanking_conserved) OGUI01000016.1:2545065-2548889 - identity 90.1SLA2ATCC64974_94930 2512070-2513110 -: phosphoribosylaminoimidazolesuccinocarboxamide synthaseATCC64974_94930ATCC64974_94940 2513436-2514485 -: unspecified productATCC64974_94940ATCC64974_94950 2517304-2518461 -: Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinATCC64974_94950ATCC64974_94960 2520742-2522857 -: DNA-(apurinic or apyrimidinic site) endonuclease 2ATCC64974_94960ATCC64974_94970 2523413-2524128 +: Cytochrome c oxidase subunit VIa | domain-containing proteinATCC64974_94970ATCC64974_94980 2524502-2527133 -: Anaphase-promoting complex subunit 5 | domain-containing proteinATCC64974_94980ATCC64974_94990 2529326-2530252 +: CorA-like Mg2+ transporter protein | domain-containing proteinATCC64974_94990ATCC64974_95000 2532134-2532808 -: unspecified productATCC64974_95000ATCC64974_95010 2539066-2540565 -: Aldehyde dehydrogenase family | domain-containing proteinATCC64974_95010ATCC64974_95020 2541144-2542595 +: CoA-transferase family III | domain-containing proteinATCC64974_95020ATCC64974_95030 2543049-2544659 +: unspecified productATCC64974_95030ATCC64974_95040 2545065-2548889 -: ANTH domain | I/LWEQ domain | domain-containing proteinATCC64974_95040ATCC64974_95050 2549839-2552736 -: Maintenance of mitochondrial morphology protein 1 | Pleckstrin homology domain | domain-containing proteinATCC64974_950502516 kb2520 kb2524 kb2528 kb2532 kb2536 kb2540 kb2544 kb2548 kb2552 kbOGUI01000016.1
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
MAT1-1-1core_MAT2517304-2518461 -annotatedATCC64974_94950Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinATCC64974_94950 covers 100% of it on the same strand
APN2flanking_conserved2520742-2522857 -annotatedATCC64974_94960DNA-(apurinic or apyrimidinic site) endonuclease 2ATCC64974_94960 covers 100% of it on the same strand
COX13flanking_conserved2523413-2524128 +annotatedATCC64974_94970Cytochrome c oxidase subunit VIa | domain-containing proteinATCC64974_94970 covers 100% of it on the same strand
MAT1-1-3core_MAT2531902-2531994 -novel—no FungiDB gene overlaps this MATPredict gene
SLA2flanking_conserved2545065-2548889 -annotatedATCC64974_95040ANTH domain | I/LWEQ domain | domain-containing proteinATCC64974_95040 covers 100% of it on the same strand

FungiDB genes inside the locus span that MATPredict did not model:

FungiDB geneCoordinatesProduct
ATCC64974_949802524502-2527133 -Anaphase-promoting complex subunit 5 | domain-containing protein
ATCC64974_949902529326-2530252 +CorA-like Mg2+ transporter protein | domain-containing protein
ATCC64974_950002532134-2532808 -unspecified product
ATCC64974_950102539066-2540565 -Aldehyde dehydrogenase family | domain-containing protein
ATCC64974_950202541144-2542595 +CoA-transferase family III | domain-containing protein
ATCC64974_950302543049-2544659 +unspecified product