MATPredict · mating-type report

AnigerCBS513-88

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:22 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on An11_A_niger_CBS_513_88MAT1-1 locus: genes from left to right on An11_A_niger_CBS_513_88, 2,442,939 to 2,474,518: MAT1-1-1 (core MAT gene, minus strand); APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand); MAT1-1-3 (core MAT gene, minus strand); SLA2 (conserved flank, minus strand).2,445 kb2,450 kb2,455 kb2,460 kb2,465 kb2,470 kb2,475 kb245.4 kb more to contig end →called locusMAT1-1-1: core MAT gene, 2,442,939–2,444,042 (-), identity 51.7%, search hit onlyMAT1-1-1APN2: conserved flank, 2,446,373–2,448,508 (-), identity 90.9%, search hit onlyAPN2COX13: conserved flank, 2,449,044–2,449,759 (+), identity 77.3%, search hit onlyCOX13MAT1-1-3: core MAT gene, 2,457,532–2,457,624 (-), identity 41.935%, search hit onlyMAT1-1-3SLA2: conserved flank, 2,471,184–2,474,518 (-), identity 89.7%, search hit onlySLA2
Gene order on An11_A_niger_CBS_513_88. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on An11_A_niger_CBS_513_88, 2,441,361 to 2,476,095An11g10170 2,441,450-2,442,185 (+): Ortholog of Aspergillus niger ATCC 1015 : 39471-mRNAAn11g10170An11g10180 2,442,939-2,444,042 (-): Ortholog(s) have role in ascospore formationAn11g10180An11g10190 2,446,100-2,448,692 (-): Ortholog(s) have DNA-(apurinic or apyrimidinic site) lyase activity, double-stranded DNA 3'-5' exodeoxyribonuclease activity, phosphodiesterase I activityAn11g10190An11g10200 2,448,989-2,449,956 (+): Protein with similarity to subunit VIa of cytochrome c oxidaseAn11g10200An11g10210 2,450,133-2,452,764 (-): Ortholog(s) have anaphase-promoting complex localizationAn11g10210An11e10220 2,453,090-2,453,208 (+): rRNAAn11e10220 5S rRNAAn11g10230 2,453,232-2,453,373 (-): protein of unknown functionAn11g10230An11g10240 2,454,044-2,455,883 (+): Has domain(s) with predicted metal ion transmembrane transporter activity, role in metal ion transport, transmembrane transport and membrane localizationAn11g10240An11g10250 2,456,088-2,457,411 (+): Has domain(s) with predicted hydrolase activityAn11g10250An11g10260 2,457,647-2,459,085 (-): Ortholog(s) have acetylglucosaminyltransferase activity, role in protein N-linked glycosylation and Golgi medial cisterna localizationAn11g10260An11g10270 2,460,460-2,461,962 (+): Has domain(s) with predicted aspartic-type endopeptidase activity and role in proteolysisAn11g10270An11g10280 2,463,007-2,464,398 (+): Ortholog of A. niger CBS 513.88 : An08g04870, A. oryzae RIB40 : AO090103000142, Aspergillus wentii : Aspwe1_0041573 and Aspergillus versicolor : Aspve1_0086390An11g10280An11g10290 2,464,563-2,466,194 (-): Has domain(s) with predicted oxidoreductase activity, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor activity and role in oxidation-reduction processAn11g10290An11g10300 2,466,197-2,468,222 (+): Has domain(s) with predicted catalytic activity and role in metabolic processAn11g10300An11g10310 2,468,675-2,470,381 (+): Gentisate 1,2-dioxygenaseAn11g10310An11g10320 2,470,439-2,474,918 (-): Predicted actin-binding protein involved in endocytosisAn11g10320 slaBAn11g10330 2,474,929-2,478,944 (-): Ortholog(s) have lipid binding activity and endoplasmic reticulum, nucleus-vacuole junction, ribosome localizationAn11g10330
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
An11_A_niger_CBS_513_88:2,442,939–2,474,518 · 31.6 kb
Own genes
An11_A_niger_CBS_513_88:2,442,939–2,474,518 · 31.6 kb
Locus
Complete locus: MAT gene(s) with their flanking genes.
Genes modelled
4 of 5 gene hits
Nearest contig end
246.9 kb
Region (samtools)
An11_A_niger_CBS_513_88:2442939-2474518
Idiomorph scores
  • MAT1-1 306.0

No other idiomorph scored.

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
MAT1-1-1core MAThit onlyDIAMOND, proteome51.7cov 46.3%4.2e-105306 bits2,442,939–2,444,042 -–199306_rmscc1040_MAT_MAT1-1An11g10180
APN2conserved flankhit onlyDIAMOND, proteome90.9cov 36.7%< 1e-180912 bits2,446,373–2,448,508 -–2903220_liq80xsp_MAT_combinedAn11g10190
COX13conserved flankhit onlyDIAMOND, proteome77.3cov 100.0%1.8e-74211 bits2,449,044–2,449,759 +–746128_af293_MAT_MAT1-2An11g10200
MAT1-1-3core MAThit onlytblastn41.9cov 17.0%7.4e+0027 bits2,457,532–2,457,624 -–5518_3639_MAT_combinednone
SLA2conserved flankhit onlyDIAMOND, proteome89.7cov 86.0%< 1e-1801,358 bits2,471,184–2,474,518 -–746128_af293_MAT_MAT1-2An11g10320 slaB

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATAn04_A_niger_CBS_513_88:1,438,797–1,440,992MAT1-2MAT1-2-11too few of the family's genes found
MATAn04_A_niger_CBS_513_88:1,895,380–1,904,858MAT1-2MAT1-1-1, MAT1-2-11too few of the family's genes found

Provenance

Genome file
AnigerCBS513-88.genome.fasta
Assembly
19 contigs · 34.0 Mb · N50 2.5 Mb
Genome SHA-256
ea31bf65aca4e79b520e98bf095fcb04c19218505b228ed558a523adc72cf736
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:21:13Z
Run time
76 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits