MATPredict · mating-type report

AhomomorphusCBS101889

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:34 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on KZ824294MAT1-1 locus: genes from left to right on KZ824294, 46,682 to 69,498: SLA2 (conserved flank, plus strand); MAT1-1-1 (core MAT gene, minus strand); MAT1-2-1 (core MAT gene, plus strand); APN2 (conserved flank, minus strand); COX13 (conserved flank, plus strand).50 kb55 kb60 kb65 kb70 kb← 45.5 kb more to contig endcalled locusSLA2: conserved flank, 46,682–50,544 (+), identity 90.3%, search hit onlySLA2MAT1-1-1: core MAT gene, 62,665–63,789 (-), identity 47.7%, search hit onlyMAT1-1-1MAT1-2-1: core MAT gene, 64,318–64,855 (+), identity 65.8%, search hit onlyMAT1-2-1APN2: conserved flank, 66,035–68,196 (-), identity 90.9%, search hit onlyAPN2COX13: conserved flank, 68,603–69,498 (+), identity 77.4%, search hit onlyCOX13
Gene order on KZ824294. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on KZ824294, 45,541 to 70,639BO97DRAFT_444509 42,701-46,180 (+): Pleckstrin homology domain | Maintenance of mitochondrial morphology protein 1 | domain-containing proteinBO97DRAFT_444509BO97DRAFT_393825 46,446-50,891 (+): cytoskeleton assembly control protein Sla2BO97DRAFT_393825BO97DRAFT_372233 51,938-53,533 (-): salicylate hydroxylaseBO97DRAFT_372233BO97DRAFT_393832 53,991-55,451 (-): CoA-transferase family IIIBO97DRAFT_393832BO97DRAFT_121385 55,867-57,714 (+): aldehyde dehydrogenase family proteinBO97DRAFT_121385BO97DRAFT_406794 57,535-59,011 (-): unspecified productBO97DRAFT_406794BO97DRAFT_349077 62,665-63,789 (-): Mating-type protein MAT alpha 1 HMG-box | domain-containing proteinBO97DRAFT_349077BO97DRAFT_455286 64,318-64,884 (+): unspecified productBO97DRAFT_455286BO97DRAFT_393839 65,822-68,304 (-): DNA lyase Apn2BO97DRAFT_393839BO97DRAFT_406796 68,571-69,612 (+): mitochondrial cytochrome c oxidase subunit VIaBO97DRAFT_406796BO97DRAFT_471595 69,866-72,794 (-): putative anaphase-promoting complex subunit Apc5BO97DRAFT_471595
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
KZ824294:46,682–69,498 · 22.8 kb
Own genes
KZ824294:46,682–69,498 · 22.8 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
5 of 5 gene hits
Nearest contig end
46.7 kb
Region (samtools)
KZ824294:46682-69498
Idiomorph scores
  • MAT1-1 292.0
  • MAT1-2 57.4

Margin over the next idiomorph: 234.6

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
SLA2conserved flankhit onlyDIAMOND, proteome90.3cov 100.0%< 1e-1801,617 bits46,682–50,544 +–746128_af293_MAT_MAT1-2BO97DRAFT_393825
MAT1-1-1core MAThit onlyDIAMOND, proteome47.7cov 99.4%2.9e-99292 bits62,665–63,789 -–162425_fgsc-a4_MAT_combinedBO97DRAFT_349077
MAT1-2-1core MAThit onlyDIAMOND, proteome65.8cov 11.2%8.8e-1357 bits64,318–64,855 +–199306_silveira_MAT_MAT1-2BO97DRAFT_455286
APN2conserved flankhit onlyDIAMOND, proteome90.9cov 36.7%6.4e-313856 bits66,035–68,196 -–2903220_liq80xsp_MAT_combinedBO97DRAFT_393839
COX13conserved flankhit onlyDIAMOND, proteome77.4cov 100.0%2.4e-71203 bits68,603–69,498 +–746128_a1163_MAT_MAT1-1BO97DRAFT_406796

Withheld candidate loci 2

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (2).

Show the 2 withheld loci

Withheld loci (2)

familylocationidiomorph genesmodelledreason
MATKZ824267:205,300–206,912MAT1-2MAT1-2-11too few of the family's genes found
MATKZ824301:100,632–111,572MAT1-2MAT1-2-1, MAT1-2-101too few of the family's genes found

Provenance

Genome file
AhomomorphusCBS101889.genome.fasta
Assembly
152 contigs · 34.1 Mb · N50 535.6 kb
Genome SHA-256
a0c288fb079b771299b0dd212f7a068d6ece6982c817421e86486d93be757e80
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'species', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': ['identical_to_reference'], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:33:21Z
Run time
57 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits