MATPredict · mating-type report

AfumigatusA1163

MAT locus above the FungiDB annotation (gene by gene)

organism not recorded

Run by MATPredict 0.8.1 (v0.8.1, 3a62e6302b) · database 86f18d232e4f · local NCBI taxonomy snapshot 2026-10-01 · rendered 2026-11-07 02:30 UTC by MATPredict 0.8.1

Result

Mating type

MAT1-1high confidence

Called loci 1

MAT1-1 MAT family · Ascomycota

high confidence
Gene order of the MAT1-1 locus on scf_000003_A_fumigatus_A1163MAT1-1 locus: genes from left to right on scf_000003_A_fumigatus_A1163, 2,517,390 to 2,530,649: COX13 (conserved flank, minus strand); APN2 (conserved flank, plus strand); MAT1-2-1 (core MAT gene, minus strand); MAT1-1-1 (core MAT gene, plus strand); SLA2 (conserved flank, minus strand).2,520 kb2,525 kb2,530 kb1,732.0 kb more to contig end →called locusCOX13: conserved flank, 2,517,390–2,518,130 (-), identity 100.0%, search hit onlyCOX13APN2: conserved flank, 2,518,491–2,520,679 (+), identity 100.0%, search hit onlyAPN2MAT1-2-1: core MAT gene, 2,521,591–2,522,628 (-), identity 85.2%, search hit onlyMAT1-2-1MAT1-1-1: core MAT gene, 2,522,745–2,523,902 (+), identity 100.0%, search hit onlyMAT1-1-1SLA2: conserved flank, 2,526,379–2,530,649 (-), identity 100.0%, search hit onlySLA2
Gene order on scf_000003_A_fumigatus_A1163. Scroll sideways to see the whole figure.
FungiDB release 71 gene models on scf_000003_A_fumigatus_A1163, 2,516,729 to 2,531,312AFUB_042860 2,514,023-2,516,990 (+): Anaphase-promoting complex subunit 5 | domain-containing proteinAFUB_042860AFUB_042870 2,517,390-2,518,214 (-): Has domain(s) with predicted cytochrome-c oxidase activity and mitochondrial respiratory chain complex IV localizationAFUB_042870AFUB_042880 2,518,491-2,520,679 (+): Has domain(s) with predicted nuclease activity and role in DNA repairAFUB_042880AFUB_042890 2,521,591-2,522,628 (-): Protein of unknown functionAFUB_042890AFUB_042900 2,522,745-2,523,902 (+): Ortholog(s) have role in ascospore formationAFUB_042900AFUB_042910 2,526,379-2,530,649 (-): Ortholog(s) have role in actin filament organization, spore germination, establishment of cell polarity, endocytosis, maintenance of cell polarity and actin cortical patch localizationAFUB_042910AFUB_042920 2,530,700-2,534,464 (-): Pleckstrin homology domain | Maintenance of mitochondrial morphology protein 1 | domain-containing proteinAFUB_042920
FungiDB release 71 annotation of the same window: gene models from the GFF (filled = CDS, pale = UTR exon, line = intron, arrow = strand). Green genes overlap a MATPredict gene on the same strand; grey genes do not. Click a gene to open it on fungidb.org.
  • core MAT gene
  • conserved flank
  • search hit only
Location
scf_000003_A_fumigatus_A1163:2,517,390–2,530,649 · 13.3 kb
Own genes
scf_000003_A_fumigatus_A1163:2,517,390–2,530,649 · 13.3 kb
Locus
Genes of both idiomorphs at one locus.
Genes modelled
5 of 5 gene hits
Nearest contig end
1.7 Mb
Region (samtools)
scf_000003_A_fumigatus_A1163:2517390-2530649
Idiomorph scores
  • MAT1-1 731.0
  • MAT1-2 226.0

Margin over the next idiomorph: 505.0

Score: bitscore of the best core-gene hit for each idiomorph.

Gene evidence

GeneRoleModel Identity %E-value Position (strand)Exons Reference recordFungiDB gene
COX13conserved flankhit onlyDIAMOND, proteome100.0cov 100.0%1.5e-92257 bits2,517,390–2,518,130 -–746128_a1163_MAT_MAT1-1AFUB_042870
APN2conserved flankhit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1801,295 bits2,518,491–2,520,679 +–746128_a1163_MAT_MAT1-1AFUB_042880
MAT1-2-1core MAThit onlyDIAMOND, proteome85.2cov 41.9%1.0e-75226 bits2,521,591–2,522,628 -–746128_af293_MAT_MAT1-2AFUB_042890
MAT1-1-1core MAThit onlyDIAMOND, proteome100.0cov 100.0%1.8e-272731 bits2,522,745–2,523,902 +–746128_a1163_MAT_MAT1-1AFUB_042900
SLA2conserved flankhit onlyDIAMOND, proteome100.0cov 100.0%< 1e-1802,018 bits2,526,379–2,530,649 -–746128_a1163_MAT_MAT1-1AFUB_042910

Withheld candidate loci 1

Places with some MAT-gene evidence that did not pass a quality gate. Most genomes have several. They are listed so a known locus can be checked against them, not because they are likely calls.

Reasons: too few of the family's genes found (1).

Show the 1 withheld locus

Withheld loci (1)

familylocationidiomorph genesmodelledreason
MATscf_000005_A_fumigatus_A1163:1,389,184–1,391,358MAT1-2MAT1-2-11too few of the family's genes found

Provenance

Genome file
AfumigatusA1163.genome.fasta
Assembly
55 contigs · 29.2 Mb · N50 3.8 Mb
Genome SHA-256
3b26018a82b3374dc3d389f05189bd9f59f14d9e03260c3d5c570d8ee897be1a
MATPredict
0.8.1 (v0.8.1, 3a62e6302b)
Database
86f18d232e4fe95d · 185 records
Taxonomy
local NCBI taxonomy snapshot 2026-10-01
Parameters
phylum=Ascomycota, phylum_guess={'requested': 'auto', 'status': 'ok', 'usable': True, 'reason': None, 'phylum': 'Ascomycota', 'phylum_taxid': 4890, 'deepest_rank': 'genus', 'routing_taxid': 1131492, 'routing_taxid_rank': 'family', 'flags': [], 'gmg_version': 'gmg 0.3.2 (66055154a)', 'index': 'bfd-reps-2026.10.5-s20000.gmgi', 'index_sha256': '0f319567f1cab17643e1daf7ffdc0e3b312bd43913e351568108d67a4a19702c', 'index_spec': 'bfd-reps-2026.10.5-s20000.gmgi', 'note': 'GmG called phylum Ascomycota', 'action': 'routed', 'weak_call_accepted': False, 'genetic_code': 1, 'genetic_code_from': 'family taxid 1131492', 'routed_by': 'family taxid 1131492 (lineage)'}, genetic_code=1, min_hits=2, require_core_role=True, max_polished_clusters_per_family=6, polish_strong_identity=50.0, polish_core_pair=True, partial_core_policy=off, homothallic_policy=off, confidence_cap_policy=off, cross_family_policy=off, fallback_after_withheld_policy=off, strong_single_gene_policy=off, scoped_roster_policy=off, scoped_roster=off: BGL1,GAP1 not searched, supported_min_bitscore=33.0
Run started
2026-11-07T02:29:42Z
Run time
49 s
Files
detection_report.yaml, detected_loci.gff3

Cite MATPredict as given in CITATION.cff at github.com/stajichlab/MATPredict. The reference records named in the gene tables are curated database entries; each record's metadata cites its source publication.

How to read this report

Idiomorph
The form of the mating-type locus a strain carries (for example MAT1-1 or MAT1-2, Plus or Minus). Basidiomycota HD and PR alleles are named after the reference they match.
High confidence
Every expected core MAT gene was found and modelled, with a conserved flanking gene where the family has one, on one contig.
Medium confidence
The core genes were found, but a gene could not be modelled, no conserved flank was found, or the locus is split (one step down).
Low confidence
A single isolated gene hit, or no core MAT gene.
Model status
Gene model: the reference protein was aligned to the genome to build the gene (exonerate, miniprot). Models differ: the two tools disagree on the structure; the alternate model is shown. Hit only: a search hit with no model, weaker evidence.
Identity
Percent amino-acid identity between the gene (or hit) and the closest reference protein.
Reference record
The curated database record whose protein matched best. Each record's metadata cites the publication or deposit it comes from.

Limits