AdauciA2016 Alternaria dauci A2016

Release tableMATPredict reportGFF3

Top track: the genes MATPredict modelled at the MAT locus. Bottom track: every FungiDB gene in the same region (locus span, shaded, plus 5 kb each side). A FungiDB gene is green when a MATPredict gene overlaps it on the same strand. Hover a gene for its coordinates and product; FungiDB gene IDs link to fungidb.org.

core MAT geneflanking conserved geneotherFungiDB gene matched by MATPredict

Ascomycota_MAT_0: MAT1-2 Ascomycota:MAT, confidence high, CM090138:2838460-2845128

MATPredictFungiDBCOX13 (flanking_conserved) CM090138:2838460-2839096 - identity 51.3COX13APN2 (flanking_conserved) CM090138:2839406-2841364 + identity 88.6APN2MAT1-2-1 (core_MAT) CM090138:2844046-2845128 - identity 56.7MAT1-2-1ACET3X_005492 2832751-2834309 -: Mitochondrial carrier protein | domain-containing proteinACET3X_005492ACET3X_005493 2834507-2835360 +: Complex I intermediate-associated protein 30 (CIA30) | domain-containing proteinACET3X_005493ACET3X_005494 2835554-2838280 +: Anaphase-promoting complex subunit 5 | domain-containing proteinACET3X_005494ACET3X_005495 2838332-2839176 -: Cytochrome c oxidase subunit VIa | domain-containing proteinACET3X_005495ACET3X_005496 2839406-2841364 +: DNA-(apurinic or apyrimidinic site) endonuclease 2ACET3X_005496ACET3X_005497 2844046-2845128 -: HMG (high mobility group) box | domain-containing proteinACET3X_005497ACET3X_005498 2845926-2846878 -: Pyridoxamine 5'-phosphate oxidase | domain-containing proteinACET3X_005498ACET3X_005499 2847119-2849360 +: RhoGAP domain | Fes/CIP4, and EFC/F-BAR homology domain | domain-containing proteinACET3X_005499ACET3X_005500 2850057-2853155 +: NIPSNAP | CDP-alcohol phosphatidyltransferase | domain-containing proteinACET3X_0055002834 kb2836 kb2838 kb2840 kb2842 kb2844 kb2846 kb2848 kb2850 kbCM090138
MATPredict geneRoleCoordinatesVerdictFungiDB geneFungiDB productWhy
COX13flanking_conserved2838460-2839096 -annotatedACET3X_005495Cytochrome c oxidase subunit VIa | domain-containing proteinACET3X_005495 covers 100% of it on the same strand
APN2flanking_conserved2839406-2841364 +annotatedACET3X_005496DNA-(apurinic or apyrimidinic site) endonuclease 2ACET3X_005496 covers 100% of it on the same strand
MAT1-2-1core_MAT2844046-2845128 -annotatedACET3X_005497HMG (high mobility group) box | domain-containing proteinACET3X_005497 covers 100% of it on the same strand